Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I09
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428...    29   2.5  
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742...    27   7.7  

>01_06_1797 +
           39941482-39941608,39942302-39942497,39942601-39942828,
           39943157-39943388,39943476-39943583,39943696-39943968,
           39944261-39944545
          Length = 482

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -1

Query: 557 PGGDCSSDIWL 525
           PGGDC+SDIW+
Sbjct: 472 PGGDCTSDIWI 482


>04_03_0289 +
           13972020-13972077,13972444-13973301,13973850-13974235,
           13974249-13974323,13975824-13976139,13976284-13977113
          Length = 840

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 124 NIIILFKKIYMCNMFLKII 68
           N+ + FK+I+MC M +KII
Sbjct: 443 NVCLAFKEIHMCKMAVKII 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,434,362
Number of Sequences: 37544
Number of extensions: 136782
Number of successful extensions: 163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)