Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I08
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    48   1e-06
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    32   0.075
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    32   0.075
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    31   0.099
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    28   0.93 
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.6  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.1  
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    27   2.1  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    27   2.8  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   2.8  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   3.7  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    26   3.7  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   3.7  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   6.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   8.6  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    25   8.6  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -1

Query: 231 PLIPIAPCPPGLPSKPRSPLSPFWPMIPGIPCGPWSPFSPGNP-*PTGPWSPLSPFSPVI 55
           P  P+AP  P +PS P+ P++P  P  P +P  P +P +P  P  P  P  P+ P +P +
Sbjct: 575 PQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSV 634

Query: 54  P 52
           P
Sbjct: 635 P 635



 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 243 SPFSPLIPIAPCPPGLPSKPRSPLSPFWPMIPGIPCGPWSPFSPGNP-*PTGPWSPLSPF 67
           +P  P  P+AP  P +PS P+ P  P  P  P +P  P +P  P  P  P  P  P+ P 
Sbjct: 601 APSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPE 660

Query: 66  SPVIP 52
           +P +P
Sbjct: 661 APSVP 665


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 171 SPFWPMIPGIPCGPWSPFSPGNP*PTGPWSPLSPFSPVIP 52
           +P +P +  +P  P++PFSP NP     W+  +  +P++P
Sbjct: 265 APVYPSMKDVPNNPFTPFSPINPYYAKSWNHTAS-APLLP 303


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = -1

Query: 234 SPLIPIAPCPPGLPSKPRSPLSPFWPMI-----PGIPCGPWSPFSPGNP*PTGPWSPLSP 70
           +PL P    PPG+P  P  P +P  P +     P +P G   P  PG P P  P  P  P
Sbjct: 491 APLPPTTFAPPGVPLPP-IPGAPGMPNLNMSQPPMVPPGMALP--PGMPAPF-PGYPAVP 546

Query: 69  FSPVIPG 49
             P IPG
Sbjct: 547 AMPGIPG 553



 Score = 29.1 bits (62), Expect = 0.53
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 231 PLIPIAPC-PPGLPSKPRSPLSPFWPMIPGIPCGPWSPFSPGN 106
           P++P     PPG+P+    P  P  P +PGIP     P +PG+
Sbjct: 523 PMVPPGMALPPGMPAP--FPGYPAVPAMPGIPGATAPPGAPGS 563


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 31.5 bits (68), Expect = 0.099
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -1

Query: 153 IPGIPCGPWSPFSPGNP*PTGPWSP 79
           I G  CG W P    NP   GPWSP
Sbjct: 327 IEGAGCGEWKPPMIRNPNYRGPWSP 351


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -3

Query: 364 SRNTAWSWFSFLTINDCCRFTFITFV-AWFXXXXXXXXXXSIAFF 233
           S N  W W SF+T   C  + FI  V  WF          ++ +F
Sbjct: 549 SENYNWWWRSFITPGFCGIYVFIFSVFYWFFKISSSSLATAVLYF 593


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -1

Query: 237 FSPLIPIAPCPPGLPSKPRSPLSPFWPMIPGIPCGPWSPF-SPGNP*PTGPWSPLSPFSP 61
           F P+ PI P      ++   P SP  P+  G+P  P  P  S     P+ P  P+    P
Sbjct: 387 FQPVQPIQPVQ---STQYYQPSSPVQPVQNGVPAPPMQPVQSTQYYQPSSPVQPVQNVKP 443

Query: 60  VIP 52
             P
Sbjct: 444 AQP 446


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 59   LYQESCWSLSPIISWL 12
            LY E C+ L P++ WL
Sbjct: 1218 LYPEGCYQLKPVLEWL 1233


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 240 PFSPLIPIAPCPPGLPSKPRSPLSPF 163
           PF+ L+PI   P G   K R P+ PF
Sbjct: 238 PFNLLVPIPGTPVGDAVKERLPIHPF 263


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
 Frame = -2

Query: 539 FFQ*YRFLLVHPVFLGSLVDP-EVLVVLADQGTLGLLSFLGHHSILEHQGHHLTLED--- 372
           FF  Y     + +FL  LV+  E       +  L LLS++  H     + HH ++     
Sbjct: 288 FFTIYELCCCNKLFLKKLVEGGEKNGEAPLEALLSLLSYINTHQRQSERSHHFSILSLIL 347

Query: 371 -HLFQEHRVVLVLLFDHKRLLQVHL 300
            H+  + R +L  L D K  + V +
Sbjct: 348 FHIIIDDRSLLYRLTDKKFKISVRV 372


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 166 FLAYDTWYSLWSLVTLFSW 110
           ++ Y+ W + WS++TLF +
Sbjct: 359 YVTYNGWLAQWSMITLFDY 377


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = -1

Query: 240 PFSPLIPIAPCPPGLPSKPRSPLSPFW-----PMIPGIPCGPWSPFSPGN 106
           PF   IP++P  P  PS    P+ P       P I   P  P S FSPG+
Sbjct: 299 PFDSGIPVSPNIPVSPSSSFVPMYPTTFPSSKPQIVNAPPAP-SYFSPGS 347



 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 225 IPIAPCPPGLPSKPRSPLSPFWPMIPGIP 139
           +P  P   G+P  P  P+SP    +P  P
Sbjct: 295 LPFYPFDSGIPVSPNIPVSPSSSFVPMYP 323



 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 168 PFWPMIPGIPCGPWSPFSPGN 106
           PF+P   GIP  P  P SP +
Sbjct: 296 PFYPFDSGIPVSPNIPVSPSS 316


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 240 PFSPLIPIAPCP--PGLPSKPRSPLSPFWPMIPGIP 139
           P+S +  + P P  P  PSKPR  +    P+ P  P
Sbjct: 145 PYSSVAALTPVPKKPSKPSKPRKKVPVSHPLPPTPP 180


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 234 SPLIPIAPCPPGLPSKPRSPLSPFWPMIPGIPCGPWSPF 118
           +PL+P  P PPG+     SP +     IPG P  P  PF
Sbjct: 286 APLVP--PPPPGMVMASPSPAAA---TIPGAPVMPNIPF 319


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +1

Query: 319 RLWSKRRT--RTTRCSWNRWSSRVRWCPWCSRI 411
           ++W  R +  + T+ + N     V WCPW S +
Sbjct: 329 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 361


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -2

Query: 356  HRVVLVLLFDHKRLLQVHLYHLCSLVHQLN 267
            H V+ +L  ++  L++V +  +C+L++QLN
Sbjct: 1013 HPVMRMLSCNNASLIRVSMDTVCALIYQLN 1042


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 438 TEGSLVRKDNQDLRVHKASKEYRVNEEKSVLLEEMAHLAHQVHHAPLQIT*LVY 599
           T+ + +  D+  + V   S   R+N  K  +L + A L H V     + T LVY
Sbjct: 244 TDLNNILDDDNSILVPDLSAHVRINSGKLSVLSKNARLTHWVERRIGKSTSLVY 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,572
Number of Sequences: 5004
Number of extensions: 49535
Number of successful extensions: 195
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)