Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I05
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    92   7e-20
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.3  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    27   3.1  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         26   5.4  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   5.4  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   7.2  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    25   7.2  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.5  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   9.5  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 91.9 bits (218), Expect = 7e-20
 Identities = 41/70 (58%), Positives = 50/70 (71%)
 Frame = +1

Query: 1   VAEPLSITVFDYGTSHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIYQKTSTYGHFGRE 180
           VAEPLSI V  YGTS KT  +L+ I++KNFDLRPG +VK L L+ P Y  T++YGHF  +
Sbjct: 311 VAEPLSIFVNTYGTSSKTSAELVEIIRKNFDLRPGVLVKSLKLQTPFYLSTASYGHFTDQ 370

Query: 181 GFPWESPKPL 210
             PWE PK L
Sbjct: 371 SKPWEQPKEL 380


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/83 (22%), Positives = 39/83 (46%)
 Frame = +2

Query: 179 KGSRGRAPSPSL*NDFRPEALCKYYTSIYYKLLIYYVCHCRKDAKLSRAFVSLDELMFVS 358
           K   G+ P+  L  ++  + L  +   +     +Y+V +  +   L + ++SL  +MFVS
Sbjct: 226 KNMCGKNPTSELPTNYSDKTLTLWENELSSMRKVYFVKYKTEYEFLQKRYLSLARIMFVS 285

Query: 359 REPREWNCGTAVRKPLPQVTAAL 427
           ++   +   T+  K +P V   L
Sbjct: 286 KKEMLF---TSQFKEIPNVNREL 305


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 107 LPGRRSKFFFTMERSCCC 54
           LP  R+  FFT+   CCC
Sbjct: 280 LPDERATMFFTIYELCCC 297


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 344 IHLKRQTPATIWRPSYNDTRSR 279
           +H++ QTP  +WR  Y+   S+
Sbjct: 220 LHVEHQTPENLWRLPYSSFHSK 241


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +1

Query: 43  SHKTQQQLLSIVKKNFDLRPGKIVKELNLRAPIYQKTSTY 162
           S +  +  L+ + K  +  P   +    LRA +Y+K+  Y
Sbjct: 18  SKRKFEDALTFITKTIEQEPNPTIDLFELRAQVYEKSGQY 57


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 2   LQSHSQLPYSTTALRTKHNN-SFSP 73
           L +HS+LP  T++  +KH + +FSP
Sbjct: 278 LPTHSRLPSRTSSFSSKHRSVTFSP 302


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 311 KLSRAFVSLDELMFVSREPREWNCGTAVRKPLPQVTAALTGFNIIIIKCSL 463
           K SRAF+    L+FVS         T V     +V     G NI  + C++
Sbjct: 174 KFSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTM 224


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 251 YTSIYYKL-LIYYVCHCRKDAKLSRAFVSLDELMFVS 358
           +TS  Y L L+YY+C  R+ +      V++DE   V+
Sbjct: 141 FTSFRYALFLVYYICRSRRLSPTD--LVAIDEYFLVN 175


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -1

Query: 507 APNNEPFLKIYRAKLSEHLIIIILNPVNA-AVT 412
           A  N PFL+I+RAK  +  ++ +++P++  AVT
Sbjct: 476 AVENSPFLEIFRAKKFD--VLFMVDPIDEYAVT 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,480
Number of Sequences: 5004
Number of extensions: 57513
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)