Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I04
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   1.3  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   1.3  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   1.3  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   1.3  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   1.8  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   4.1  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   4.1  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.2  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   7.2  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    25   7.2  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   9.5  
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    25   9.5  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   9.5  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 4    ADERT*SSYVYWRLSRSATCERFIPLTTSTTGQP 105
            A +R+ S+Y+  + S  A CE FI L   + G+P
Sbjct: 937  AVDRSDSNYISIKESGYAICEEFIDLLIKSNGEP 970


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 63  RAFYSSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKA 227
           + FY S +E N T L  +     + +    Y   KDK++   P   ++LM + K+
Sbjct: 158 KGFYISPNERNFTRLCRSASSVHISYQNGLYCIDKDKSLTKEPSVNIILMNVGKS 212


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 75  SSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLM 212
           S  H+ N + L + +   +    K  YT +KD ++V SP G+   M
Sbjct: 299 SPQHQANPSTLNNPLKTQNFDSSKNLYTDNKDSSLV-SPTGLQSRM 343


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 415 SVSTKAKLKLLTSGDTKKAADIINQWANEKTRGHIKSPI 531
           S + KA    L SG    +  +IN WAN+     +KSP+
Sbjct: 716 STNAKASTPALASGSIWGSPSVINAWANKPAA--LKSPL 752


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 291 PRYNLHCLKTCRSPHDYLHRRQLCTEALAS 202
           P++N HCLK C      L +   C  A  S
Sbjct: 711 PKFNRHCLKICERRLPLLQQSFFCLAATVS 740


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 120 DKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGE 239
           D +S+    +T   S  +N++   +GV   +LL  +G+GE
Sbjct: 535 DNSSISCAFQTNVPSLPRNIILEGVGVDRNLLLVSSGSGE 574


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +3

Query: 72   YSSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGEGSRA 251
            Y+S  E++  +  +   K S++  K  +TS +D+ ++ +    +++  +Y  G     + 
Sbjct: 864  YASVEEFDYFSSTEHASKRSVKRFKNDFTSDEDETLIRA----VVITQIYYGGTNRLIKW 919

Query: 252  E-IDKFLGNGDYSGVANPYISL 314
            E + K   N D   +   Y+S+
Sbjct: 920  EAVQKCFPNRDIYALTRRYLSI 941


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 388 LWMRNSRSLSVSTKAKLKLLTSGDTKKAADIINQWANEK 504
           LW +NS +L +S+   L++L       + D ++ W  E+
Sbjct: 308 LW-KNSNALRISSNDLLEILLKHGVYVSLDTLHSWLQER 345


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 46  SRSATCERFIPLTTSTTGQP 105
           SR  + ER  P+TTST G P
Sbjct: 630 SRHESVERATPITTSTNGIP 649


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +3

Query: 330 EMNPDYFTMANKIYVGNKYTLDEKFTITVRQYQSEVETIDFRR 458
           E  P+Y + A    +G  ++ D   + +VR Y   + +   R+
Sbjct: 237 EFFPNYTSAAGVFAIGEMFSYDPNVSCSVRNYLDSITSYPIRQ 279


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 150 TYTSSKDKNVVSSPLGVMMLMLLYKAGAGE 239
           T TS K + +++   G+M LM + +AG G+
Sbjct: 47  TSTSPKIREILTMDGGLMRLMNILRAGRGQ 76


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 149 FLKKLQRSFVNGIA*GCPVVLV 84
           +LKK+ RSF NG   G P   V
Sbjct: 66  YLKKVHRSFKNGFRSGKPAAAV 87


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = -1

Query: 214 SISIITPNGEDTTFLSFDDVYVSLRNCKEVLSMASPKAVLLYSWSEE*NARTL-QTAITA 38
           SI+ +TP  ED  F S +     L N +   S+    A+  + W        L +  I +
Sbjct: 202 SINTLTPYAEDYAFSSLNTSAPPLSNKEYAFSVNHLPAINEHKWKSRVETNMLFELRIKS 261

Query: 37  NKHNLIMFARL 5
           N +  + F  L
Sbjct: 262 NDNQSVPFEYL 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,860
Number of Sequences: 5004
Number of extensions: 46067
Number of successful extensions: 156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)