Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I02
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   1.8  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   4.1  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    26   5.4  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    25   7.1  
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy...    25   7.1  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.4  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -3

Query: 255 SERRRPLHINNEKSEAVN---TLCNSFKQVNKKRRRIYRTIENYRNRKQL 115
           +E+   +  NNE SE+ N   TLCN+F++  K  + + +  EN +N   L
Sbjct: 560 AEKEAAVATNNELSESKNSLQTLCNAFQE--KLAKSVMQLKENEQNFSSL 607


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
 Frame = -3

Query: 321  EVSVSNVKIFFFTKLI*SQKRKSERRRPLHINNEKSEAVNTLCNSFKQVNKKRRRIYRTI 142
            E SVS   I F  KL+     KS       +       ++      +   KK R   + +
Sbjct: 914  ETSVSQ-SISFLYKLVPGVASKSYGLNVARMAGIPFSILSRATEISENYEKKHRNARKNV 972

Query: 141  ENYRNRKQLLI---EEIEFKRKLYDL 73
               +  K L+I   EEI+FKR  YDL
Sbjct: 973  FIRKVAKLLMILNAEEIDFKRLFYDL 998


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -3

Query: 474 F*SGYRGFCSLYRSSVTFEAGANXXXXXXXXXXSPLQILRPHSFDILMYKIEV 316
           F  G++GFCS++ ++    +G            +P + L PH+   + ++I +
Sbjct: 259 FRHGFKGFCSVFTTAAFSFSGTEVIGLAAAEVDNPQKAL-PHAVKQVFWRIAI 310


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 466 GVSGLLFTLSVVGHVRSWCQ 407
           G   L+FT S+ GH+ +W Q
Sbjct: 139 GKGSLIFTASMSGHIANWPQ 158


>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 434 RRSRSKLVPIFNSLVYYVFFHHCRFLG 354
           RR+ S  VP   S V  VF H C F G
Sbjct: 140 RRAASSYVPSRPSHVPKVFIHECAFSG 166


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 526 NKSDNYSPFPVVGCRVCILIGVSGLLFTLSV 434
           NKS N+    VVGC V I +GV  +L  L +
Sbjct: 235 NKSSNHVGV-VVGCSVAIPVGVVLILIGLGI 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,645
Number of Sequences: 5004
Number of extensions: 39293
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)