Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I02
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0651 + 4887811-4887832,4888305-4888411,4888557-4889165           29   4.2  
02_04_0521 - 23631951-23633810                                         28   7.4  
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980...    27   9.7  
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    27   9.7  

>07_01_0651 + 4887811-4887832,4888305-4888411,4888557-4889165
          Length = 245

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 246 RRPLHINNEKSEAVNTLCNSFKQVNKKRRRIYRTIENYRNRKQLLIEEIEFKRKLYDL 73
           RR L +  ++   V T+C    +   +  R +  ++  +NR +LL+E  E +RK+ +L
Sbjct: 147 RRDLKLWKKRVIRVTTVCKEVVEGRDELERDFFFLQ--QNRAKLLVENCELQRKIVEL 202


>02_04_0521 - 23631951-23633810
          Length = 619

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 526 NKSDNYSPFPVVGCRVCILIGVSGLLFTLSVVGHVRSW 413
           N+     P P+ GCR   ++ +SG   T  + G V  W
Sbjct: 310 NRISGEIPLPLAGCRSLEVVNLSGNKITGELSGAVAKW 347


>10_06_0028 -
           9802362-9802475,9802919-9803090,9803167-9803208,
           9803344-9804011,9804098-9804418,9804495-9804833,
           9804856-9805109,9805300-9805510
          Length = 706

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 429 PTTDRVNRSPDTPIKIQTRQPTTGNG 506
           PTT R  R+  +P K+ TR+   G G
Sbjct: 520 PTTKRSKRAKSSPPKLDTRRKAVGTG 545


>04_04_1144 +
           31222556-31222633,31223238-31227665,31227724-31227789,
           31227790-31228014,31228097-31228255,31228393-31228551,
           31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -3

Query: 264 KRKSERRRPLHINNEKSEAVNT----LCNSFKQVNKKRRRIYRTIENYRNRKQLLIEEIE 97
           +R  E    LH +   +E  +T    L N     N+K + +   +E YR++   L +E+E
Sbjct: 580 ERSLELESLLHTSKSDAEVAHTRTQDLENELNTANEKFKEVEADLEQYRSKVSQLSDELE 639


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,213,756
Number of Sequences: 37544
Number of extensions: 211054
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)