Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I02
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical pr...    31   0.53 
U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta...    31   0.53 
Z66513-12|CAI46602.1|  492|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z66513-11|CAA91332.3|  427|Caenorhabditis elegans Hypothetical p...    29   2.8  
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical...    29   2.8  
Z73423-7|CAL36497.1|  567|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z73423-6|CAD44093.1|  575|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z73423-5|CAA97777.3|  575|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z50045-6|CAL36494.1|  567|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z50045-5|CAD44129.1|  575|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z50045-4|CAA90365.3|  575|Caenorhabditis elegans Hypothetical pr...    28   5.0  
X70834-1|CAA50182.1|  592|Caenorhabditis elegans Cytoplasmic int...    28   5.0  
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        28   6.6  
U50069-7|AAB37561.1|  913|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    28   6.6  
AL132860-32|CAO82074.1|  570|Caenorhabditis elegans Hypothetical...    28   6.6  
AL132860-31|CAB60519.2|  457|Caenorhabditis elegans Hypothetical...    28   6.6  
Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z70267-3|CAA94214.1|  534|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z70267-2|CAA94213.1|  525|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical
           protein R07B5.8a protein.
          Length = 568

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -3

Query: 267 QKRKSERRRPLHINNEKSEAVNTLCNSFKQVNKKRRRIYRTIENYRNR 124
           Q+RKS ++ P+H++ EK+   +T       V K R+R ++    +R R
Sbjct: 517 QRRKSIQKTPVHVSMEKATPTSTTSLPVGSVKKVRKRRFQFGMKHRKR 564


>U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta
           subunit protein 3 protein.
          Length = 204

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 12/47 (25%), Positives = 29/47 (61%)
 Frame = -3

Query: 213 EAVNTLCNSFKQVNKKRRRIYRTIENYRNRKQLLIEEIEFKRKLYDL 73
           E + T+    K+V+K   ++Y  +  +++  + ++E+I F++ LY+L
Sbjct: 30  EQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFRKNLYEL 76


>Z66513-12|CAI46602.1|  492|Caenorhabditis elegans Hypothetical
           protein F54D5.5b protein.
          Length = 492

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -3

Query: 267 QKRKSERRRPLHINNEKSEAVNTLCNSFKQVN--KKRRRIYRTIENYRNRKQL 115
           QKR+ E+R+   +  E ++A N + +   Q++  KK R  YR  E  R +KQL
Sbjct: 267 QKRREEKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERDCYRK-ELSRCKKQL 318


>Z66513-11|CAA91332.3|  427|Caenorhabditis elegans Hypothetical
           protein F54D5.5a protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -3

Query: 267 QKRKSERRRPLHINNEKSEAVNTLCNSFKQVN--KKRRRIYRTIENYRNRKQL 115
           QKR+ E+R+   +  E ++A N + +   Q++  KK R  YR  E  R +KQL
Sbjct: 202 QKRREEKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERDCYRK-ELSRCKKQL 253


>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
           protein Y39B6A.18 protein.
          Length = 1352

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -3

Query: 630 SQMTEDLDATKNYDRFLKTYIKHVTLKFSRINFNTTNQTITARSQ*SAVESVF 472
           +Q ++ L   K+    +K  +K+VTL+ ++++  + NQ+       SA+ SVF
Sbjct: 546 AQFSDALPTVKSIPDAMKKGVKNVTLELNQMSLESLNQSDGIGHSASALRSVF 598


>Z73423-7|CAL36497.1|  567|Caenorhabditis elegans Hypothetical
           protein F38B2.1c protein.
          Length = 567

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = -3

Query: 138 NYRNRKQLLIEEIEFKRKLYD 76
           +Y+N+ Q L+EEI+F R+++D
Sbjct: 222 DYQNQVQTLLEEIDFLRRVHD 242


>Z73423-6|CAD44093.1|  575|Caenorhabditis elegans Hypothetical
           protein F38B2.1b protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = -3

Query: 138 NYRNRKQLLIEEIEFKRKLYD 76
           +Y+N+ Q L+EEI+F R+++D
Sbjct: 230 DYQNQVQTLLEEIDFLRRVHD 250


>Z73423-5|CAA97777.3|  575|Caenorhabditis elegans Hypothetical
           protein F38B2.1a protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = -3

Query: 138 NYRNRKQLLIEEIEFKRKLYD 76
           +Y+N+ Q L+EEI+F R+++D
Sbjct: 230 DYQNQVQTLLEEIDFLRRVHD 250


>Z50045-6|CAL36494.1|  567|Caenorhabditis elegans Hypothetical
           protein F38B2.1c protein.
          Length = 567

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = -3

Query: 138 NYRNRKQLLIEEIEFKRKLYD 76
           +Y+N+ Q L+EEI+F R+++D
Sbjct: 222 DYQNQVQTLLEEIDFLRRVHD 242


>Z50045-5|CAD44129.1|  575|Caenorhabditis elegans Hypothetical
           protein F38B2.1b protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = -3

Query: 138 NYRNRKQLLIEEIEFKRKLYD 76
           +Y+N+ Q L+EEI+F R+++D
Sbjct: 230 DYQNQVQTLLEEIDFLRRVHD 250


>Z50045-4|CAA90365.3|  575|Caenorhabditis elegans Hypothetical
           protein F38B2.1a protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = -3

Query: 138 NYRNRKQLLIEEIEFKRKLYD 76
           +Y+N+ Q L+EEI+F R+++D
Sbjct: 230 DYQNQVQTLLEEIDFLRRVHD 250


>X70834-1|CAA50182.1|  592|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 592

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = -3

Query: 138 NYRNRKQLLIEEIEFKRKLYD 76
           +Y+N+ Q L+EEI+F R+++D
Sbjct: 249 DYQNQVQTLLEEIDFLRRVHD 269


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 624 MTEDLDATKNYDRFLKTYIKHV 559
           M +D+DA++NY R    Y++H+
Sbjct: 528 MFKDMDASENYGRLFNQYLEHM 549


>U50069-7|AAB37561.1|  913|Caenorhabditis elegans Hypothetical
           protein C09B9.7 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = -3

Query: 225 NEKSEAVNTLCNSFKQVNKKRR 160
           +EKS+A+NTL +S+ Q  +++R
Sbjct: 665 SEKSKALNTLISSYSQTGRRKR 686


>U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical
           protein M02D8.3 protein.
          Length = 915

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 267 QKRKSERRRPLHINNEKSEAVNTLCNSFKQVNKKRRRIYRTIENYRNRKQL 115
           +K K+ ++   +   EK EA   L  S+K+  + R R  +T      R+QL
Sbjct: 391 EKEKTRKKEENNKRKEKKEAEKLLERSYKRAEQARVRYEKTGIRLEKRRQL 441


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 624 MTEDLDATKNYDRFLKTYIKHV 559
           M +D+DA++NY R    Y++H+
Sbjct: 565 MFKDMDASENYGRLFNQYLEHM 586


>AL132860-32|CAO82074.1|  570|Caenorhabditis elegans Hypothetical
           protein Y56A3A.7b protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -3

Query: 267 QKRKSERRRPLHINNEKSEAVNTLC-NSFKQVNKKRRR---IYRTIENYRNRKQLL 112
           +KR+ E R  +    EK E VNTL       +N +R+R   I + +E   + K+ L
Sbjct: 277 EKRREEIRENIKKEMEKKEQVNTLIREKLASMNARRKRLQEIRKMLEKQEHEKEKL 332


>AL132860-31|CAB60519.2|  457|Caenorhabditis elegans Hypothetical
           protein Y56A3A.7a protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -3

Query: 267 QKRKSERRRPLHINNEKSEAVNTLC-NSFKQVNKKRRR---IYRTIENYRNRKQLL 112
           +KR+ E R  +    EK E VNTL       +N +R+R   I + +E   + K+ L
Sbjct: 277 EKRREEIRENIKKEMEKKEQVNTLIREKLASMNARRKRLQEIRKMLEKQEHEKEKL 332


>Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 219 KSEAVNTLCNSFKQVNKKRRRIY 151
           KSE  N  C SF Q+N+  R+ Y
Sbjct: 149 KSETFNQFCQSFCQINEPVRQFY 171


>Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 219 KSEAVNTLCNSFKQVNKKRRRIY 151
           KSE  N  C SF Q+N+  R+ Y
Sbjct: 149 KSETFNQFCQSFCQINEPVRQFY 171


>Z70267-3|CAA94214.1|  534|Caenorhabditis elegans Hypothetical
           protein K04C1.2b protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 639 KCPSQMTEDLDATKNYDRFLKTYIKHVTLKFSRINFNTTNQT 514
           KCP Q  + LD     +R +   +K+  L+ S  N +  N T
Sbjct: 155 KCPDQKDKKLDEQARIERNVAGILKNAALEISNRNDDPQNST 196


>Z70267-2|CAA94213.1|  525|Caenorhabditis elegans Hypothetical
           protein K04C1.2a protein.
          Length = 525

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 639 KCPSQMTEDLDATKNYDRFLKTYIKHVTLKFSRINFNTTNQT 514
           KCP Q  + LD     +R +   +K+  L+ S  N +  N T
Sbjct: 146 KCPDQKDKKLDEQARIERNVAGILKNAALEISNRNDDPQNST 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,462,477
Number of Sequences: 27780
Number of extensions: 213767
Number of successful extensions: 629
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)