Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I01
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical p...    29   4.0  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    28   6.9  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    28   6.9  

>Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical
           protein C08F11.13 protein.
          Length = 404

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
 Frame = +1

Query: 487 TILCPKLWSQSDFGQASPVPVFIKVILIKYNLYFILIKC----SIHYFVIWKLP*IAVFL 654
           T++C  L+S+  +   SP  V  +  + K+ L+F+LI C    SI  +VI K+  + VF 
Sbjct: 307 TVIC--LFSKIVYFHKSPKNVETRFFMKKWYLWFLLINCVIWSSIPLYVIGKVGNV-VFS 363

Query: 655 CNTVF 669
            N++F
Sbjct: 364 PNSLF 368


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 446 VCGSDXKTYKNQGRL 490
           VCGSD KTY N+ RL
Sbjct: 475 VCGSDGKTYSNECRL 489


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 446 VCGSDXKTYKNQGRL 490
           VCGSD KTY N+ RL
Sbjct: 483 VCGSDGKTYSNECRL 497


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,947
Number of Sequences: 27780
Number of extensions: 360278
Number of successful extensions: 837
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)