Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_I01
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.1  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +2

Query: 308 LIKCSSQTKHRYQVKGKHQLLALVEHHD-KQLRNARRIAFQHQNTSPVCGSDXKTYKNQG 484
           L +C ++ K    +K + Q        D K LRN R  +++       C     TY++ G
Sbjct: 105 LFECENKEKSNVCLKFEEQKRRKKSLDDVKILRNDRIDSYKSNLKCDKCS----TYQSNG 160

Query: 485 RLFCAQNC 508
              C +NC
Sbjct: 161 EEVCLENC 168


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 443 PVCGSDXKTYKNQGRLF-CAQNCGVKVTLARQAPC 544
           PVC S+ K Y N   L   A + G  +T +R   C
Sbjct: 116 PVCASNGKIYANHCELHRAACHSGSSLTKSRLMRC 150


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 175 NLFIDKNGWNKSQDGNRPEW 234
           N+F+DK G++     N  +W
Sbjct: 198 NIFLDKKGFHMDGYTNNSKW 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,937
Number of Sequences: 438
Number of extensions: 5199
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)