Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_H23
(661 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64847-1|AAN84827.1| 358|Caenorhabditis elegans Hypothetical pr... 59 2e-09
U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z68215-14|CAL49436.1| 394|Caenorhabditis elegans Hypothetical p... 40 0.002
Z68215-13|CAL49435.1| 382|Caenorhabditis elegans Hypothetical p... 40 0.002
Z68215-12|CAA92455.2| 368|Caenorhabditis elegans Hypothetical p... 40 0.002
Z68215-10|CAC42269.1| 399|Caenorhabditis elegans Hypothetical p... 40 0.002
Z68215-9|CAC42270.1| 384|Caenorhabditis elegans Hypothetical pr... 40 0.002
AM231684-1|CAJ77753.1| 384|Caenorhabditis elegans GDP-mannose 4... 40 0.002
AM231683-1|CAJ77752.1| 399|Caenorhabditis elegans GDP-mannose 4... 40 0.002
Z81553-5|CAB04494.1| 382|Caenorhabditis elegans Hypothetical pr... 37 0.011
AM231685-1|CAJ77754.1| 375|Caenorhabditis elegans GDP-mannose 4... 37 0.011
U40939-5|AAA81703.3| 343|Caenorhabditis elegans Hypothetical pr... 33 0.18
U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva ... 32 0.31
AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuroni... 32 0.31
Z81470-7|CAB03885.1| 129|Caenorhabditis elegans Hypothetical pr... 29 2.2
U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical pr... 29 3.9
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 28 5.1
U41510-1|ABP49525.1| 327|Caenorhabditis elegans Hypothetical pr... 28 5.1
U23511-14|AAC46799.1| 357|Caenorhabditis elegans Hypothetical p... 28 5.1
U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protei... 28 5.1
U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protei... 28 5.1
L08403-3|AAT92076.1| 335|Caenorhabditis elegans Hypothetical pr... 28 6.8
>U64847-1|AAN84827.1| 358|Caenorhabditis elegans Hypothetical
protein F08F3.4 protein.
Length = 358
Score = 59.3 bits (137), Expect = 2e-09
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 3/156 (1%)
Frame = +1
Query: 160 DVTAPGVAEQLVAGA--DVLFHLAAVVSGHAEIDFDLGLRVNFDATRALLEAARRKAPNL 333
D+ G E++V D + H +A++S E + L L+VN +L+ A + L
Sbjct: 88 DILNQGSIEEIVVNKNIDTIVHFSALLSAVGETNVPLALQVNCRGVENILQVAAKH--KL 145
Query: 334 RFVFASTVGVFGGEPPPA-VGELTVTAPHSSYGAAKAMSELLVNDYARRGWADARAVRLP 510
+ ST+G FG P +LTV P + YG +K +E L + R D R++R P
Sbjct: 146 KVFIPSTIGAFGPTTPRENTPDLTVQCPTTIYGVSKVYAERLGEYFNHRFGVDFRSMRFP 205
Query: 511 TVSVRGGAPNLAVTSFASGIVREPLNGEVAVCPVGP 618
+ + P T +A I + L C + P
Sbjct: 206 GI-ISATKPGGGTTDYAIQIFYDALQKGKHTCYLRP 240
>U64862-7|AAB52622.1| 374|Caenorhabditis elegans Hypothetical
protein ZC8.1 protein.
Length = 374
Score = 48.0 bits (109), Expect = 6e-06
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Frame = +1
Query: 1 VTGGGGFLGARLADYLLENECPLRVSALLLTDVHQPTLSPKRHADSRVSTLAADVTAPGV 180
+ GGGGFLGA + L + C R+ ++ D + S +S + A V
Sbjct: 6 IVGGGGFLGAHVISALQKIGCKERI---IVVDPCPQEFKTIKIDKSNISYIKASFLDDKV 62
Query: 181 AEQLVAGADVLFHLAAVVSGHAEI---DFDLGLRVNFDATRALLEAARRKAPNLRFVFAS 351
E ++ GA + HLAAV GH + D N + T+ L++ + RF++AS
Sbjct: 63 LENILNGASAVVHLAAV--GHTGLIAGDRKSVHNFNVNGTKQLIKQCKALGVK-RFLYAS 119
Query: 352 TVGV-FGGEPPPAVGE 396
+V V F GEP V E
Sbjct: 120 SVAVSFIGEPLDNVTE 135
>Z68215-14|CAL49436.1| 394|Caenorhabditis elegans Hypothetical
protein C53B4.7e protein.
Length = 394
Score = 39.5 bits (88), Expect = 0.002
Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Frame = +1
Query: 1 VTGGGGFLGARLADYLLENECPL-----RVSALLLTDVHQPTLSP-KRHADSRVSTLAAD 162
+TG G G+ LA+ LL + R S+ + +P H DS S D
Sbjct: 50 ITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHYGD 109
Query: 163 VTAPGVAEQLVAGADV--LFHLAAVVSGHAEIDFDLG---LRVNFDATRALLEA--ARRK 321
+T +L++ + ++HLAA H ++ FDL V+ T LL+A A R
Sbjct: 110 MTDSSCLIKLISTIEPTEVYHLAA--QSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRL 167
Query: 322 APNLRFVFASTVGVFGGEPPPAVGELTVTAPHSSYGAAKAMSELLVNDY 468
+RF AST ++G E T P S Y AK +V +Y
Sbjct: 168 TEKVRFYQASTSELYGKVQEIPQSEKTPFYPRSPYAVAKMYGYWIVVNY 216
>Z68215-13|CAL49435.1| 382|Caenorhabditis elegans Hypothetical
protein C53B4.7d protein.
Length = 382
Score = 39.5 bits (88), Expect = 0.002
Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Frame = +1
Query: 1 VTGGGGFLGARLADYLLENECPL-----RVSALLLTDVHQPTLSP-KRHADSRVSTLAAD 162
+TG G G+ LA+ LL + R S+ + +P H DS S D
Sbjct: 38 ITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHYGD 97
Query: 163 VTAPGVAEQLVAGADV--LFHLAAVVSGHAEIDFDLG---LRVNFDATRALLEA--ARRK 321
+T +L++ + ++HLAA H ++ FDL V+ T LL+A A R
Sbjct: 98 MTDSSCLIKLISTIEPTEVYHLAA--QSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRL 155
Query: 322 APNLRFVFASTVGVFGGEPPPAVGELTVTAPHSSYGAAKAMSELLVNDY 468
+RF AST ++G E T P S Y AK +V +Y
Sbjct: 156 TEKVRFYQASTSELYGKVQEIPQSEKTPFYPRSPYAVAKMYGYWIVVNY 204
>Z68215-12|CAA92455.2| 368|Caenorhabditis elegans Hypothetical
protein C53B4.7c protein.
Length = 368
Score = 39.5 bits (88), Expect = 0.002
Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Frame = +1
Query: 1 VTGGGGFLGARLADYLLENECPL-----RVSALLLTDVHQPTLSP-KRHADSRVSTLAAD 162
+TG G G+ LA+ LL + R S+ + +P H DS S D
Sbjct: 24 ITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHYGD 83
Query: 163 VTAPGVAEQLVAGADV--LFHLAAVVSGHAEIDFDLG---LRVNFDATRALLEA--ARRK 321
+T +L++ + ++HLAA H ++ FDL V+ T LL+A A R
Sbjct: 84 MTDSSCLIKLISTIEPTEVYHLAA--QSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRL 141
Query: 322 APNLRFVFASTVGVFGGEPPPAVGELTVTAPHSSYGAAKAMSELLVNDY 468
+RF AST ++G E T P S Y AK +V +Y
Sbjct: 142 TEKVRFYQASTSELYGKVQEIPQSEKTPFYPRSPYAVAKMYGYWIVVNY 190
>Z68215-10|CAC42269.1| 399|Caenorhabditis elegans Hypothetical
protein C53B4.7b protein.
Length = 399
Score = 39.5 bits (88), Expect = 0.002
Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Frame = +1
Query: 1 VTGGGGFLGARLADYLLENECPL-----RVSALLLTDVHQPTLSP-KRHADSRVSTLAAD 162
+TG G G+ LA+ LL + R S+ + +P H DS S D
Sbjct: 55 ITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHYGD 114
Query: 163 VTAPGVAEQLVAGADV--LFHLAAVVSGHAEIDFDLG---LRVNFDATRALLEA--ARRK 321
+T +L++ + ++HLAA H ++ FDL V+ T LL+A A R
Sbjct: 115 MTDSSCLIKLISTIEPTEVYHLAA--QSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRL 172
Query: 322 APNLRFVFASTVGVFGGEPPPAVGELTVTAPHSSYGAAKAMSELLVNDY 468
+RF AST ++G E T P S Y AK +V +Y
Sbjct: 173 TEKVRFYQASTSELYGKVQEIPQSEKTPFYPRSPYAVAKMYGYWIVVNY 221
>Z68215-9|CAC42270.1| 384|Caenorhabditis elegans Hypothetical
protein C53B4.7a protein.
Length = 384
Score = 39.5 bits (88), Expect = 0.002
Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Frame = +1
Query: 1 VTGGGGFLGARLADYLLENECPL-----RVSALLLTDVHQPTLSP-KRHADSRVSTLAAD 162
+TG G G+ LA+ LL + R S+ + +P H DS S D
Sbjct: 40 ITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHYGD 99
Query: 163 VTAPGVAEQLVAGADV--LFHLAAVVSGHAEIDFDLG---LRVNFDATRALLEA--ARRK 321
+T +L++ + ++HLAA H ++ FDL V+ T LL+A A R
Sbjct: 100 MTDSSCLIKLISTIEPTEVYHLAA--QSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRL 157
Query: 322 APNLRFVFASTVGVFGGEPPPAVGELTVTAPHSSYGAAKAMSELLVNDY 468
+RF AST ++G E T P S Y AK +V +Y
Sbjct: 158 TEKVRFYQASTSELYGKVQEIPQSEKTPFYPRSPYAVAKMYGYWIVVNY 206
>AM231684-1|CAJ77753.1| 384|Caenorhabditis elegans GDP-mannose
4,6-dehydratase protein.
Length = 384
Score = 39.5 bits (88), Expect = 0.002
Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Frame = +1
Query: 1 VTGGGGFLGARLADYLLENECPL-----RVSALLLTDVHQPTLSP-KRHADSRVSTLAAD 162
+TG G G+ LA+ LL + R S+ + +P H DS S D
Sbjct: 40 ITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHYGD 99
Query: 163 VTAPGVAEQLVAGADV--LFHLAAVVSGHAEIDFDLG---LRVNFDATRALLEA--ARRK 321
+T +L++ + ++HLAA H ++ FDL V+ T LL+A A R
Sbjct: 100 MTDSSCLIKLISTIEPTEVYHLAA--QSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRL 157
Query: 322 APNLRFVFASTVGVFGGEPPPAVGELTVTAPHSSYGAAKAMSELLVNDY 468
+RF AST ++G E T P S Y AK +V +Y
Sbjct: 158 TEKVRFYQASTSELYGKVQEIPQSEKTPFYPRSPYAVAKMYGYWIVVNY 206
>AM231683-1|CAJ77752.1| 399|Caenorhabditis elegans GDP-mannose
4,6-dehydratase protein.
Length = 399
Score = 39.5 bits (88), Expect = 0.002
Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Frame = +1
Query: 1 VTGGGGFLGARLADYLLENECPL-----RVSALLLTDVHQPTLSP-KRHADSRVSTLAAD 162
+TG G G+ LA+ LL + R S+ + +P H DS S D
Sbjct: 55 ITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLHYGD 114
Query: 163 VTAPGVAEQLVAGADV--LFHLAAVVSGHAEIDFDLG---LRVNFDATRALLEA--ARRK 321
+T +L++ + ++HLAA H ++ FDL V+ T LL+A A R
Sbjct: 115 MTDSSCLIKLISTIEPTEVYHLAA--QSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRL 172
Query: 322 APNLRFVFASTVGVFGGEPPPAVGELTVTAPHSSYGAAKAMSELLVNDY 468
+RF AST ++G E T P S Y AK +V +Y
Sbjct: 173 TEKVRFYQASTSELYGKVQEIPQSEKTPFYPRSPYAVAKMYGYWIVVNY 221
>Z81553-5|CAB04494.1| 382|Caenorhabditis elegans Hypothetical
protein F56H6.5 protein.
Length = 382
Score = 37.1 bits (82), Expect = 0.011
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Frame = +1
Query: 211 LFHLAAVVSGHAEIDFDLG---LRVNFDATRALLEA--ARRKAPNLRFVFASTVGVFGGE 375
++HLAA H ++ FDL V+ T LL+A A R +RF AST ++G
Sbjct: 116 IYHLAA--QSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRLTEKVRFYQASTSELYGKV 173
Query: 376 PPPAVGELTVTAPHSSYGAAKAMSELLVNDY 468
ELT P S Y AK +V +Y
Sbjct: 174 QEIPQSELTPFYPRSPYAVAKMYGYWIVVNY 204
>AM231685-1|CAJ77754.1| 375|Caenorhabditis elegans GDP-mannose
4,6-dehydratase protein.
Length = 375
Score = 37.1 bits (82), Expect = 0.011
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Frame = +1
Query: 211 LFHLAAVVSGHAEIDFDLG---LRVNFDATRALLEA--ARRKAPNLRFVFASTVGVFGGE 375
++HLAA H ++ FDL V+ T LL+A A R +RF AST ++G
Sbjct: 109 IYHLAA--QSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRLTEKVRFYQASTSELYGKV 166
Query: 376 PPPAVGELTVTAPHSSYGAAKAMSELLVNDY 468
ELT P S Y AK +V +Y
Sbjct: 167 QEIPQSELTPFYPRSPYAVAKMYGYWIVVNY 197
>U40939-5|AAA81703.3| 343|Caenorhabditis elegans Hypothetical
protein F13D11.4 protein.
Length = 343
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +1
Query: 1 VTGGGGFLGARLADYLLENECPLRVSALLLTDVHQPTLSPKRHADSRVSTLAADVTAPGV 180
VTG GF+G + LL+N +R + L + + K + + + AD+
Sbjct: 10 VTGASGFIGTHCVEILLKNGYRVRGTVRDLNNKAKVQPIKKLDKKNHLELVEADLLDSTC 69
Query: 181 AEQLVAGADVLFHLAA 228
++ VAG D + H+A+
Sbjct: 70 WKKAVAGCDYVLHVAS 85
>U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva
protein 1 protein.
Length = 467
Score = 32.3 bits (70), Expect = 0.31
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 6/175 (3%)
Frame = +1
Query: 1 VTGGGGFLGARLADYLLENECPLRVSALLLTDVHQPTLSPKRHADSRVSTLAADVTAPGV 180
+TGG GF+G+ L D L+ L ++ D + K++ + + ++ V
Sbjct: 141 ITGGAGFVGSHLVDKLM-----LDGHEVIALDNY--FTGRKKNVEHWIGHPNFEMVHHDV 193
Query: 181 AEQLVAGADVLFHLAAVVS-GHAEIDFDLGLRVNFDATRALLEAARRKAPNLRFVFASTV 357
D ++HLA+ S H + ++ N T +L A+R + + AST
Sbjct: 194 VNPYFVEVDQIYHLASPASPPHYMYNPVKTIKTNTLGTINMLGLAKRVKATV--LLASTS 251
Query: 358 GVFGG---EPPPAV--GELTVTAPHSSYGAAKAMSELLVNDYARRGWADARAVRL 507
V+G P P G + P + Y K ++E L+ Y ++ R R+
Sbjct: 252 EVYGDPEVHPQPETYWGHVNTIGPRACYDEGKRVAESLMVAYNKQENIKIRIARI 306
>AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuronic
acid decarboxylase protein.
Length = 467
Score = 32.3 bits (70), Expect = 0.31
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 6/175 (3%)
Frame = +1
Query: 1 VTGGGGFLGARLADYLLENECPLRVSALLLTDVHQPTLSPKRHADSRVSTLAADVTAPGV 180
+TGG GF+G+ L D L+ L ++ D + K++ + + ++ V
Sbjct: 141 ITGGAGFVGSHLVDKLM-----LDGHEVIALDNY--FTGRKKNVEHWIGHPNFEMVHHDV 193
Query: 181 AEQLVAGADVLFHLAAVVS-GHAEIDFDLGLRVNFDATRALLEAARRKAPNLRFVFASTV 357
D ++HLA+ S H + ++ N T +L A+R + + AST
Sbjct: 194 VNPYFVEVDQIYHLASPASPPHYMYNPVKTIKTNTLGTINMLGLAKRVKATV--LLASTS 251
Query: 358 GVFGG---EPPPAV--GELTVTAPHSSYGAAKAMSELLVNDYARRGWADARAVRL 507
V+G P P G + P + Y K ++E L+ Y ++ R R+
Sbjct: 252 EVYGDPEVHPQPETYWGHVNTIGPRACYDEGKRVAESLMVAYNKQENIKIRIARI 306
>Z81470-7|CAB03885.1| 129|Caenorhabditis elegans Hypothetical
protein C14A6.8 protein.
Length = 129
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 280 FDATRALLEAARRKAPNLRFVFASTVGVFGGEPPPAVGELTV 405
FD T LL++ + NL + + V G EPPP LTV
Sbjct: 6 FDPTNNLLKSDGNEYQNLAILDPNAPAVGGNEPPPPPPPLTV 47
>U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical
protein C01F1.3a protein.
Length = 631
Score = 28.7 bits (61), Expect = 3.9
Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 10/166 (6%)
Frame = +1
Query: 1 VTGGGGFLGARLADYLLE--NECP-LRVSALLLTDVHQPTLSPKRHADSRVSTLAADVTA 171
+TGG GF+G+ +Y+ + C + + L+L Q R++ R + D+
Sbjct: 10 ITGGCGFIGSNFVNYIHDAWPTCNFVNIDKLILNSDTQNVAESVRNS-PRYKLVLTDIKN 68
Query: 172 PGVAEQLVA--GADVLFHLAA-VVSGHAEIDFDLGLRVNFDATRALLEAARRKAPNLRFV 342
+ D + H AA S + ++ N + LE R RFV
Sbjct: 69 EAAILNVFEQNEIDTVIHFAADCTSTRCYNETAEAVQNNVLSFIQFLETVRTYGKIKRFV 128
Query: 343 FASTVGVFG----GEPPPAVGELTVTAPHSSYGAAKAMSELLVNDY 468
ST V+G E E + P + Y A K E V Y
Sbjct: 129 HISTDEVYGDSDLSENEQGKVEFSRLVPGNPYAATKIAGEAYVRAY 174
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +1
Query: 508 PTVSVRGGAPNLAVTSFASGIVREPLNGEVAVCPVGPRGVT 630
P S GAP LA A + +P G VCP GPRG T
Sbjct: 123 PGKSGEPGAPGLA--GIAPPVTIDPTKG-CRVCPNGPRGPT 160
>U41510-1|ABP49525.1| 327|Caenorhabditis elegans Hypothetical
protein ZC449.6 protein.
Length = 327
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 1 VTGGGGFLGARLADYLLEN 57
+TGGGGFLGA L L +N
Sbjct: 9 ITGGGGFLGAHLIAALQKN 27
>U23511-14|AAC46799.1| 357|Caenorhabditis elegans Hypothetical
protein C32D5.12 protein.
Length = 357
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/75 (28%), Positives = 32/75 (42%)
Frame = +1
Query: 1 VTGGGGFLGARLADYLLENECPLRVSALLLTDVHQPTLSPKRHADSRVSTLAADVTAPGV 180
VTGG G +G + LLENE +++ + + D S R +V D+
Sbjct: 6 VTGGAGLVGRYVVQRLLENE---QIAEIRIID----RQSTSRDESRKVKLYQIDLNDRKS 58
Query: 181 AEQLVAGADVLFHLA 225
E + G D + H A
Sbjct: 59 LENALRGCDGVIHCA 73
>U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protein
15, isoform a protein.
Length = 780
Score = 28.3 bits (60), Expect = 5.1
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Frame = +1
Query: 103 QPTLSPKRHADSRVSTLAADVT--APGVAEQLVA-GADVLFHLAAVVSGHAEIDFDLGLR 273
QPT + R+ V+T A T AP L A A +AA V+ D +
Sbjct: 116 QPTSAQARNPPVTVATTQASTTPSAPNPPGGLPAPSASATAAVAAAVASFPSPDTSIRPG 175
Query: 274 VNFDATRALLEAARRKAPNLRFVFASTV---GVFGGEPPPAVGELTVTAPHSSYGAAKAM 444
APN+ F S+ G G+PPP +G + P + YG M
Sbjct: 176 GQITPGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMGAPNMGGPPNGYGGYGMM 235
Query: 445 S 447
+
Sbjct: 236 N 236
>U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protein
15, isoform b protein.
Length = 777
Score = 28.3 bits (60), Expect = 5.1
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Frame = +1
Query: 103 QPTLSPKRHADSRVSTLAADVT--APGVAEQLVA-GADVLFHLAAVVSGHAEIDFDLGLR 273
QPT + R+ V+T A T AP L A A +AA V+ D +
Sbjct: 113 QPTSAQARNPPVTVATTQASTTPSAPNPPGGLPAPSASATAAVAAAVASFPSPDTSIRPG 172
Query: 274 VNFDATRALLEAARRKAPNLRFVFASTV---GVFGGEPPPAVGELTVTAPHSSYGAAKAM 444
APN+ F S+ G G+PPP +G + P + YG M
Sbjct: 173 GQITPGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMGAPNMGGPPNGYGGYGMM 232
Query: 445 S 447
+
Sbjct: 233 N 233
>L08403-3|AAT92076.1| 335|Caenorhabditis elegans Hypothetical
protein F42H10.3 protein.
Length = 335
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 364 FGGEPPPAVGELTVTAPHSSYGAAKA 441
F G PPP+ ++ T+PHS+ + ++
Sbjct: 234 FAGAPPPSSNSISSTSPHSTLSSPQS 259
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,046,652
Number of Sequences: 27780
Number of extensions: 224697
Number of successful extensions: 834
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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