Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H22
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0117 + 8580270-8580677,8581541-8582328,8582412-8582663,858...    29   1.8  
04_04_0014 + 22158441-22158669,22158782-22158878,22159264-221594...    28   4.2  

>05_03_0117 +
           8580270-8580677,8581541-8582328,8582412-8582663,
           8582744-8582854,8582942-8583020,8583104-8583175,
           8583253-8583420
          Length = 625

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 158 YWPFHVYPYVFIMKTRYLKEFLINRFGSKRWGCRETIN 271
           YWP H  P   ++   Y  EFLIN     R  CR + +
Sbjct: 544 YWPCHKQPQGTVLCGYYACEFLINAEDLPRLECRTSFD 581


>04_04_0014 +
           22158441-22158669,22158782-22158878,22159264-22159461,
           22159907-22160141,22160383-22160710,22160798-22161068,
           22161169-22161424,22161508-22161964,22162096-22162286
          Length = 753

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 152 LVYWPFHVYPYVFIMKTRYLKEFLINRFGSKRWGCRETINVI 277
           +V+  FHV  ++F      +  F+++RF  + W CR  +++I
Sbjct: 304 VVFLAFHVGDFIFSFSAGPIFLFMLDRF-LRFWQCRAKVDII 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,716,307
Number of Sequences: 37544
Number of extensions: 184334
Number of successful extensions: 264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)