Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H22
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U53336-5|AAO21380.1|  271|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U53336-4|AAA96177.2|  290|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm recep...    28   5.0  

>Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical protein
            F56A8.1 protein.
          Length = 1049

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 453  FFFTYINYSANLFTIVFWAINY*LSTGL 370
            FF T I     L T++ WA NY + TG+
Sbjct: 960  FFETKIQKDRKLKTLIVWAYNYSIKTGI 987


>U53336-5|AAO21380.1|  271|Caenorhabditis elegans Hypothetical
           protein K07C11.7b protein.
          Length = 271

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 224 INRFGSKRWGCRETINVI 277
           +++FG +RWGCR+ +  +
Sbjct: 200 LDQFGDERWGCRDLLKTV 217


>U53336-4|AAA96177.2|  290|Caenorhabditis elegans Hypothetical
           protein K07C11.7a protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 224 INRFGSKRWGCRETINVI 277
           +++FG +RWGCR+ +  +
Sbjct: 219 LDQFGDERWGCRDLLKTV 236


>U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm receptor
           protein 139 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/85 (20%), Positives = 38/85 (44%)
 Frame = -1

Query: 543 SSVISIFILYNYF*YSRPVFKKRVYTYKICFFFTYINYSANLFTIVFWAINY*LSTGLEG 364
           +++++    Y Y    RP F   +  YK+CF F        +F + +  +++ +   LE 
Sbjct: 101 TALLATQFFYRYIVVCRPQFLHHIKGYKLCFIFL---PGVVIFFLWYLNVHFGMKKTLEK 157

Query: 363 SSRREIIFTK*TFLQTYKVKFSFIQ 289
           +   + +  K     T+++ F  +Q
Sbjct: 158 AKFSQEVILKNCEEDTFQIVFVALQ 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,444,534
Number of Sequences: 27780
Number of extensions: 207586
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)