Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H21
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    28   1.0  
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    25   9.5  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   9.5  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   9.5  

>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 541 IVSSGFCRLTVSPVQV*LSIVDISNISEADISPFMSIDKAT 419
           + +S F    V+P    L I+DI N S+AD++ ++ + K T
Sbjct: 527 VKNSKFRYQQVAPETFGLDILDILNASDADLNNYVGLKKMT 567


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 466 ISEADISPFMSIDKA 422
           + E DISP +S+DKA
Sbjct: 172 VKEIDISPLVSVDKA 186


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/52 (21%), Positives = 19/52 (36%)
 Frame = +2

Query: 287 LWASNYPELKESRIRHDICTGKAPSKYKYNYFGXXXXXXXXXXXXCFINAHK 442
           LW  + P ++  R  ++I    AP+ Y+ N                 I  H+
Sbjct: 322 LWTQDPPPMQSFRPNYNIAIPNAPAYYRSNVTAAAAANAAAAFASASIVKHQ 373


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 79  IKSHRQNIVHIIQKINNYIIT 17
           I SH     H+++K+ NYI T
Sbjct: 206 ISSHESTRSHLLRKLKNYIST 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,942
Number of Sequences: 5004
Number of extensions: 34433
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)