Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H20
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   3.2  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.2  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    25   5.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.6  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    25   7.3  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/60 (23%), Positives = 33/60 (55%)
 Frame = -1

Query: 220 ADSSRNIVISSYPMKLVTPVCPYIHFVFFICCSTSGHKSVIREFLITNIMVSFIAVHILE 41
           A SSRN++I+   ++++  VC Y +    I   ++ H+++ +   I +  +   A+ +L+
Sbjct: 629 ASSSRNLLITMNCLRVLEKVCKYSNIRKEIIARSNLHENLKKLLAIPHDKLRLYALKVLK 688


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = +2

Query: 56  CNKRYHYICYKKLSNDRFMTRCGTTDEKYK--MDVRTNRCYKFHWIARNNNVSAAICSAE 229
           CN+R+H    KK  +D   T       K +    +  N     +W AR +N    I  AE
Sbjct: 56  CNRRFHSTWQKKKHDDLTATVPVIDFRKNQKLTSIVVNAIQAIYWYARRSNCLTGINEAE 115


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 287 FADDPKWNSTNLIRLGFYNWGDSNFFGTLHGQTLEEAGYE 406
           F D  +W+    +  G  +  D +   T H +TLEE G +
Sbjct: 68  FRDTDRWSGHMALPGGTRSLTDKSDIQTAHRETLEEVGID 107


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +2

Query: 161  NRCYKFHWIARNNNVSAAICSAEGGHLAIINSETEAEVLTTIF 289
            ++CY  HW  +        C  E  H +    + + ++LT +F
Sbjct: 1115 HKCYDPHWYKKYGGCFGLECLIEQDHSSKWLFDRQVDILTALF 1157


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 318 LVEFHFGSSANIVVKTSASVSLLIMAKWPPSAEQIAAETL 199
           LVE HFGS  N  V  S   ++L+ + + P+   + A  L
Sbjct: 180 LVEGHFGSRQNGSVGLSNERTILLQSAFMPAKACLCASIL 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,562
Number of Sequences: 5004
Number of extensions: 48069
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)