Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H20
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979...    29   1.8  
03_02_0718 + 10648025-10648669                                         29   2.4  
02_05_0720 - 31213391-31213617,31213724-31213772,31213898-312140...    28   4.3  
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188...    28   5.6  
07_02_0023 - 11918735-11918827,11919139-11919231,11919320-119194...    27   7.5  
01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041     27   7.5  
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216...    27   9.9  
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855...    27   9.9  
01_06_0142 + 26909463-26909828                                         27   9.9  

>08_02_1547 + 27795664-27795674,27795743-27795892,27796182-27797906,
            27799447-27799546,27799657-27800268,27800399-27800521,
            27800905-27801039,27801108-27801209,27801716-27801778,
            27801854-27802045,27802121-27802258,27802632-27802694,
            27803068-27803466
          Length = 1270

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 506  VHMWCHLGDHCGTCRHISEVSLRSRKMVH 420
            +H W  +G+H G CR      +RSRK +H
Sbjct: 1245 IHFWRRMGNHIGKCRW----GIRSRKNLH 1269


>03_02_0718 + 10648025-10648669
          Length = 214

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +2

Query: 413 GPGEPSFDYGGKPQRCGGM----FRNGLLDDTTCE 505
           G G   +DY G+P  CGG+    FR+G +++   E
Sbjct: 128 GGGVGYYDYNGEPGECGGVDDESFRDGAMEEQLLE 162


>02_05_0720 -
           31213391-31213617,31213724-31213772,31213898-31214076,
           31215861-31216110
          Length = 234

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 203 VSAAICSAEGGHLAIINSETEAEVLTTIFA-DDPKWNSTNLIRLGFYNW 346
           + AAI +A       I   ++ EVL  + A  DPK N+ N + L  Y+W
Sbjct: 52  LQAAIDAAAAAATKAIAGRSDEEVLAAVLARKDPKPNAGNGLDLEKYSW 100


>02_01_0282 +
           1882844-1883413,1883519-1883644,1883733-1883930,
           1884442-1884666,1884844-1885224,1885282-1885989,
           1886546-1886839,1887211-1887709,1887949-1888721
          Length = 1257

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 104 GHSRVSYNKYNGIVYCSPHPRINLRRDIRG 15
           G SR+   K +G+  C+P  R  +RR IRG
Sbjct: 155 GSSRMEAEKDDGLENCAPSVRYAIRRLIRG 184


>07_02_0023 -
           11918735-11918827,11919139-11919231,11919320-11919484,
           11920234-11920327,11921012-11921136,11921228-11921313,
           11921786-11921864,11923777-11923857,11924153-11924260,
           11924870-11924994,11925110-11925530
          Length = 489

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 321 KLVEFHFGSSANIVVKTSASVSLLIM--AKWPPSAEQIAAE 205
           ++++  F      ++  +ASV   +M  A WPP+  Q+A E
Sbjct: 252 RMLDMGFEPEVRAILSQTASVRQTVMFSATWPPAVHQLAQE 292


>01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041
          Length = 425

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 470 TCRHISEVSLRSRKMVHLAPISH 402
           T RH++  +L S+K+ HLA + H
Sbjct: 362 TQRHVASDNLESKKLAHLAAMEH 384


>12_02_0498 +
          19721038-19721178,19721376-19721472,19721576-19721619,
          19722120-19722203,19722441-19722662
          Length = 195

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 89 SYNKYNGIVYCSPH 48
          +YN + G++YC PH
Sbjct: 50 NYNSFEGVLYCRPH 63


>02_05_0338 -
           28084169-28084366,28084414-28085225,28085565-28085595,
           28085638-28086214,28086439-28087145,28087188-28087228,
           28087253-28087366,28087517-28088108
          Length = 1023

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 443 GKPQRCGGMFRNGLLDDTTCEQNIPVIC 526
           GK   CGGMFR  L D   C +++  IC
Sbjct: 327 GKGYECGGMFRFSLSD--FCNKSVNHIC 352


>01_06_0142 + 26909463-26909828
          Length = 121

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 347 GDSNFFGTLHGQTLEEAGYEKWGPGEPSFDYGGKPQRCGG 466
           GDS+  G LHG+ + +     WG G P  D G K +  GG
Sbjct: 36  GDSS--GALHGRKMVQWWRSVWGGGRP--DGGSKVEGGGG 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,821,687
Number of Sequences: 37544
Number of extensions: 330346
Number of successful extensions: 862
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)