Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H19
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    28   1.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.5  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   3.3  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   5.7  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   9.9  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   9.9  

>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 257 DDNILKLPKVTHDAELIANL--PENFDPRDKWPECPTLNEIRDQGSCGSCWAFGA 415
           ++++ K P +++  + I  L  P++ D    WP    L  +   GS   C  FG+
Sbjct: 37  EESLKKYPVISNPQDFIVTLDGPDDPDLAVNWPLAKKLRNVAVMGSACLCAGFGS 91


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 205 EVPASFPCVLFLIYQIYKRI*ERM 134
           +V A FP ++FL++Q YK +  +M
Sbjct: 240 KVTAEFPIIVFLLFQTYKDLIPKM 263


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = -2

Query: 444 MHTRSVIASTAPKAQQLPHDP*SLISFNVGHSGHLSLGSKFSGRFAISSAS*VTLGN 274
           M + S I S+ P   QLP  P + +SF       + LG  FS    +SS S  T  N
Sbjct: 137 MTSMSSITSSTPTPSQLPVRPSTSLSF----FDDIPLGPSFSAETILSSLSISTSNN 189


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 506 ICGLGCNGGMPTLAWEYWKHVGLVSGG 586
           +C LG N     + + YWK  G  + G
Sbjct: 194 LCNLGVNNEKKFIGFRYWKDPGAFNNG 220


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 585 PPDTSPTCFQYSQAKVGIPPLQPR 514
           PP   PT   YSQ ++G P L+P+
Sbjct: 438 PPVPHPTSL-YSQIRIGCPYLKPK 460


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 255 FNAPINILMCANGVCVGKFRPAFHVFCFLFIKFINASESGWG 130
           FN  + I +C  GV  G     FH + +L I  +     G+G
Sbjct: 410 FNNTMTIALCVFGVFAGAMHRVFHRYKYLQIIGLVIKIVGYG 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,726
Number of Sequences: 5004
Number of extensions: 57915
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)