Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H18
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    37   0.002
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    28   1.2  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   4.7  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   4.7  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    25   6.2  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    25   6.2  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   8.2  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
 Frame = +3

Query: 177 FRGVPYAKQPVGHLRFQELQPLEP-QEYYIDATEEGPACPQT--DVLYGRIMKPK-GFSE 344
           F G+ YAK PVG LR++    LE   +Y  D  +    CPQ   +    ++  P   + E
Sbjct: 21  FTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDFKYDE 80

Query: 345 ACIHANIHVPLEALPTKXXXXXXXXXXXXXXXXXTLGLPILVFIHGGGYSFGS 503
            C+  NI VP    P +                   G P+L FIHGG    G+
Sbjct: 81  DCLFLNIWVPAGEKPAE-------------------GWPVLYFIHGGWLQVGN 114


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 391 VGRASRGTWMLAWMHASLKPLGFIIRPYSTSV 296
           +G+  R  W++ W   +++P   +IRP STS+
Sbjct: 242 LGKTKR--WIICWSFQAMRPHNELIRPSSTSL 271


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 431 IESRRYSRPSYISVHTRWRVLFRIRGC 511
           +E + YS P + + HT WR++   +GC
Sbjct: 64  LEDKTYS-PLFKAGHTTWRIVLFPKGC 89


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 492 SFGSGDADLHGPEYLVSRNIIRNN 563
           + GS D+  HGP + ++RNI  ++
Sbjct: 202 TIGSSDSTNHGPAFQLARNIFHDS 225


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 453 REYRLDSMRSSPDRQRHSVTSLAEPRGARGCWRGCT 346
           R Y + S R S    +  ++ L E  GARG W+G T
Sbjct: 145 RSYTIHSKRFSI---KSIISELWEKEGARGLWKGHT 177


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 163 PPSSAHRVTPHTHPDSVRAITLH 95
           P  S HRVT H  P   R+I  H
Sbjct: 121 PAGSVHRVTTHMAPIPARSIGSH 143


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 566 KVITNDVPAD-EIFGSVEICIPGSERVPSTVYE 471
           +  T  VPA   + G+VE+  P    V +TVYE
Sbjct: 302 QAFTTTVPASGSVSGTVEVVQPTGGTVTNTVYE 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,718
Number of Sequences: 5004
Number of extensions: 49589
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)