Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H16
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   0.55 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 0.55
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 368 LPKPVCTSSATYSPPFFLTRSYAFFRYPLGNCMVPPAP 255
           L KPV +SS T + P   T+S     +    C V  +P
Sbjct: 318 LEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
 Frame = +2

Query: 110 ETP-YHKCPALAIAPANASPQ 169
           ETP Y  CP     P N +PQ
Sbjct: 206 ETPNYTACPPTLACPLNPNPQ 226


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 63  VEARWHWYRHTVGLCGCQS 7
           +E RW  Y+ TV   GC +
Sbjct: 391 MEDRWFTYQETVDPAGCNA 409


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 277 TVWYLRLLVWTP 242
           TV+Y  L+VW P
Sbjct: 134 TVYYSGLVVWQP 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,198
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)