Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H12
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    31   0.15 
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   4.3  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   5.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.5  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    25   7.5  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.9  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   9.9  

>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +2

Query: 56   VPS*RWFSRRIYEAADAALQLSDFYRQVSSPLLAHVNFVYPSDQVNEETTTKHKFRTFYA 235
            +P+ +  +  I+EA   A  L      V+  + +H+  V+PS  +  +      F +  A
Sbjct: 773  IPNIQNINMSIFEAFPIACSLQQIEHWVNEKVASHLMSVFPSKVILRKNQRPSDFASLVA 832

Query: 236  GSELVVAGRTINN-PTELDTQV 298
             SEL     + ++ P+E+ T++
Sbjct: 833  VSELTGVNLSASSTPSEIMTEI 854


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 293  ECLALLDYLSYVQQQPVQNQRRKCEI 216
            +C ALL  L + ++  V+NQR K E+
Sbjct: 978  QCAALLSCLVFQEKSEVENQRMKEEL 1003


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 134 QVSSPLLAHVNFVYPSDQVNEETTTKHKFRTFYA 235
           +V S +L  VN  YP  +VN E   KH   T +A
Sbjct: 368 RVISAVLTGVNRAYPFAEVNSEKFDKH-MNTLFA 400


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 376 YEKHENFPLERLWAYLTIEQLLDDKDASDIPDED 477
           +  HE FP    W  L    ++ DK  + +P+ D
Sbjct: 50  WNSHEYFPSPSNWRALPFYTIILDKWTNGVPEND 83


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 120 VTFTDKCPHLCSLTSTLFIRLIR*TKKRLLSTNFA 224
           +TF D  P LCS+   + +  I   K RL   +FA
Sbjct: 56  ITFIDWIPFLCSILGIVIVNSI--DKSRLSGDSFA 88


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 442 DDKDASDIPDEDQNKENNPDKKALTL 519
           DD D  +  DED++++NN + + L +
Sbjct: 207 DDDDDDEDEDEDEDEDNNNNNRWLLI 232


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 347 QNVSWYIHRLKLHRIQVLE 291
           + +SWY+  ++LH +Q +E
Sbjct: 217 EKISWYLDTVELHLLQEIE 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,922
Number of Sequences: 5004
Number of extensions: 49459
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)