Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_H12
(554 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678... 29 2.5
02_05_1261 + 35305909-35307042,35307779-35307968,35308550-35308818 29 3.3
02_04_0071 + 19457502-19458092,19458558-19458723,19458816-194590... 29 3.3
01_06_1198 + 35341375-35341635,35341750-35341953,35342151-353427... 29 3.3
01_05_0134 - 18456233-18457572,18457636-18457863,18458134-18458293 28 4.4
08_01_0124 - 978511-978515,979256-979345,979423-979498,979617-97... 28 5.8
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569... 28 5.8
10_01_0022 + 295760-295830,296885-296918,297042-297097,297292-29... 23 6.9
03_06_0702 + 35626836-35627712,35627820-35627992,35629318-35629584 27 7.6
01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052 27 7.6
>05_05_0199 -
23165776-23166259,23166356-23167128,23167633-23167869,
23167973-23168197
Length = 572
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 236 GSELVVAGRTINNPTELDTQVLGFCGVLDDGYTRRHFDKKL 358
G LV RT+ P + Q + +LDDGY R + +K+
Sbjct: 365 GVSLVAGNRTVREPRVV-VQTMSDIDILDDGYRWRKYGQKV 404
>02_05_1261 + 35305909-35307042,35307779-35307968,35308550-35308818
Length = 530
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 101 DAALQLSDFYRQVSSPLLAHVNFVYPSDQVNEETTTKHKF 220
+AA+ L ++R +S V P+D V EE T H+F
Sbjct: 195 NAAILLCLYWRHLSDEKCVEVVAPVPTDVVEEEDVTSHRF 234
>02_04_0071 +
19457502-19458092,19458558-19458723,19458816-19459027,
19460103-19460596,19460682-19460730,19460886-19461194
Length = 606
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 352 ETEGPRFLYEKHENFPLERLWAYLTIEQLLDDKDASDIPDEDQNKE 489
+T+ RF+ ++ + + YL +QLLD DA+ I D++ E
Sbjct: 539 DTKRARFIGKQSRLYQTWSIAGYLVAKQLLDKPDAARILSNDEDSE 584
>01_06_1198 +
35341375-35341635,35341750-35341953,35342151-35342737,
35342825-35342986,35343096-35343549
Length = 555
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 182 DQVNEETTTKHKFRTFYAGSELVVAG-RTINNPTELDTQVLGFCGVLDDGYTRRHFDKKL 358
D+ +++ ++R G + +AG RT+ P + Q + +LDDGY R + +K+
Sbjct: 339 DEFDDDEPDSKRWRKDGDGEGISMAGNRTVREPRVV-VQTMSDIDILDDGYRWRKYGQKV 397
>01_05_0134 - 18456233-18457572,18457636-18457863,18458134-18458293
Length = 575
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 250 CCWTYDK*SNRARHSSTWILWSFRRWIYQETF*QETEGPRFLYEKHENFPLERLW 414
C W ++ N RH L FRR +Y+ E E ++ +N P + LW
Sbjct: 218 CTWYIEE--NAKRHLHGDALTKFRRLVYEVMKADEFERRWCAFKNRDNVPEKELW 270
>08_01_0124 -
978511-978515,979256-979345,979423-979498,979617-979697,
979794-979960,980051-980489
Length = 285
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 442 DDKDASDIPDEDQNKENNPDKKALTLALKY 531
DD+D +D+ ED+ + +NP K + Y
Sbjct: 108 DDEDGADVNKEDEKRNDNPRKHPRMAQMPY 137
>03_02_0112 +
5689439-5689474,5689629-5689778,5690194-5690361,
5691334-5691458,5691914-5692007,5692844-5692942,
5693730-5693910,5694051-5694166,5694758-5694913,
5695226-5695354,5695554-5695718
Length = 472
Score = 27.9 bits (59), Expect = 5.8
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Frame = +2
Query: 116 LSDFYRQVSSPLLAHVNFVYPSDQVNE-ETTTKHKFRTFYAGSELVVAGRTINNPTELDT 292
LS + Q+ L + NFV PS ++NE + K R F V G + N T+
Sbjct: 92 LSKYQHQLEDLLTKNPNFVRPSHRLNEVQGWVKSGLRDFSISRASVEWGIPVPNDTKQTI 151
Query: 293 QV-----LGF-CGVLDDG 328
V LG+ +LDDG
Sbjct: 152 YVWFDALLGYISALLDDG 169
>10_01_0022 +
295760-295830,296885-296918,297042-297097,297292-297337
Length = 68
Score = 23.4 bits (48), Expect(2) = 6.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 392 TSHWSVSGRI*Q*NNYWTTKMPL 460
+ HWSV+ R + Y TTKM +
Sbjct: 41 SDHWSVTTRFIRHRVYLTTKMDM 63
Score = 23.0 bits (47), Expect(2) = 6.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 344 FDKKLKVPGSCTKNMKTSHWSVSG 415
FD K+P S + T H SV+G
Sbjct: 5 FDGSYKIPSSVSHPAMTRHRSVTG 28
>03_06_0702 + 35626836-35627712,35627820-35627992,35629318-35629584
Length = 438
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -3
Query: 396 EVFMFFVQEPGTFSFLSKCLLVYPSSKTPQNPST*VSSSVGLFIVRPATTSSEPA 232
E+ F + G S+L + V P+ + NP+ V ++G + +RP +E A
Sbjct: 136 ELLRFVISRMGDLSWLLRA--VPPALRRAPNPAELVLRAIGRYYIRPGGRHTEAA 188
>01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052
Length = 495
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 406 RLWAYLTIEQLLDDKDASDIPDED 477
R+WA + +LDD D DIPDED
Sbjct: 75 RVWASTPL--VLDDVDLLDIPDED 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,391,501
Number of Sequences: 37544
Number of extensions: 297895
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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