Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H12
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    30   0.97 
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z70036-1|CAA93875.1|  522|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -2

Query: 259 SSNNQFRTSVESAKFVLSSRFFVHLIRRINKVDVSEQR*GHLSVKVT 119
           S NN F + + SA   L +R  VH    +N + +++++   LSVK++
Sbjct: 90  SLNNNFYSEISSALDYLHTRNIVHGFLHLNSIYITDRKNQKLSVKLS 136


>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical protein
            F48E3.3 protein.
          Length = 1493

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 379  EKHENFPLERLWAYLTIEQLLDDKDASDIPDEDQNKENNPDKKALTLALK 528
            +KH   PL+R + Y    +L  D +  ++       +N P K+ LTL+L+
Sbjct: 984  DKHSELPLKRFYRYAAASELSFDHN-GNLNTNVVRFDNLPSKQLLTLSLQ 1032


>Z70036-1|CAA93875.1|  522|Caenorhabditis elegans Hypothetical
           protein T01B4.1 protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 373 LYEKHENFPLERLWAYLTIEQLLDDKDASDIPDEDQNKENNPD 501
           L E+ EN   + +WA   I+Q   +K   D+ DED+ K +  D
Sbjct: 309 LQERVEN---QYMWALELIDQKYQEKLKQDMYDEDEKKADKND 348


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical protein
            T04G9.1 protein.
          Length = 1610

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 80   RRIYEAADAALQLSDFYRQVSSPLLAHVNFVYPSDQVNEETTTKHKFRT 226
            R +Y+  D+ LQ    Y QVS P    +       ++ + T+ K KFR+
Sbjct: 1023 RTMYDNLDSKLQNHVRYGQVSLPKTFELKLKSIEQRLGQWTSVKEKFRS 1071


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,809,001
Number of Sequences: 27780
Number of extensions: 278118
Number of successful extensions: 863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)