Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_H11
(338 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 27 0.59
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 0.59
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 0.59
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 0.78
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 1.8
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 3.2
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 4.2
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 25 4.2
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 24 5.5
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 24 5.5
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 24 5.5
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 24 7.3
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 24 7.3
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 23 9.6
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 9.6
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 23 9.6
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 23 9.6
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 23 9.6
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 23 9.6
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 27.5 bits (58), Expect = 0.59
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 54 RAFYSSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKA 218
+ FY S +E N T L + + + Y KDK++ P ++LM + K+
Sbjct: 158 KGFYISPNERNFTRLCRSASSVHISYQNGLYCIDKDKSLTKEPSVNIILMNVGKS 212
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 27.5 bits (58), Expect = 0.59
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 66 SSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLM 203
S H+ N + L + + + K YT +KD ++V SP G+ M
Sbjct: 299 SPQHQANPSTLNNPLKTQNFDSSKNLYTDNKDSSLV-SPTGLQSRM 343
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.5 bits (58), Expect = 0.59
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 256 NWSISARLPSPAPALYRSISII-TPNGEDTTFLSFDDVYVSLRNCKEVLSMASPKAVL 86
+W I LP P P++ SIS+ T GED D+ + N + +P ++
Sbjct: 238 DWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIV 295
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 0.78
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 1 ERT*SSYVYWRLSRSATCERFIPLTTSTTGQP 96
+R+ S+Y+ + S A CE FI L + G+P
Sbjct: 939 DRSDSNYISIKESGYAICEEFIDLLIKSNGEP 970
Score = 25.8 bits (54), Expect = 1.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 286 KPRYNLHCLKNWSISARLPSPAPALYRSISIITPNGEDTTFLSFDD 149
+P++ H L+ + L A ++I ITPNG+ + DD
Sbjct: 2484 RPKWRFHLLRQLQHTKGLGRNRVATRQNIITITPNGQARGIFAGDD 2529
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 1.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 111 DKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGE 230
D +S+ +T S +N++ +GV +LL +G+GE
Sbjct: 535 DNSSISCAFQTNVPSLPRNIILEGVGVDRNLLLVSSGSGE 574
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 37 SRSATCERFIPLTTSTTGQP 96
SR + ER P+TTST G P
Sbjct: 630 SRHESVERATPITTSTNGIP 649
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 141 TYTSSKDKNVVSSPLGVMMLMLLYKAGAGE 230
T TS K + +++ G+M LM + +AG G+
Sbjct: 47 TSTSPKIREILTMDGGLMRLMNILRAGRGQ 76
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 24.6 bits (51), Expect = 4.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 140 FLKKLQRSFVNGIA*GCPVVLV 75
+LKK+ RSF NG G P V
Sbjct: 66 YLKKVHRSFKNGFRSGKPAAAV 87
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 24.2 bits (50), Expect = 5.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 322 PRTFYLS*CTDCKPRYNLHC 263
PR+++ C C RY+ HC
Sbjct: 411 PRSYHCGACKRCINRYDHHC 430
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 24.2 bits (50), Expect = 5.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 277 YNLHCLKNWSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYVS 137
YN H LK+W L S P Y + + + F+ D YV+
Sbjct: 1345 YNYHVLKDWC----LESGVPEAYLQLEELLQTSKILQFVKDDPNYVA 1387
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 24.2 bits (50), Expect = 5.5
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -2
Query: 205 SISIITPNGEDTTFLSFDDVYVSLRNCKEVLSMASPKAVLLYSWSEE*NARTL-QTAITA 29
SI+ +TP ED F S + L N + S+ A+ + W L + I +
Sbjct: 202 SINTLTPYAEDYAFSSLNTSAPPLSNKEYAFSVNHLPAINEHKWKSRVETNMLFELRIKS 261
Query: 28 NKHNLIMF 5
N + + F
Sbjct: 262 NDNQSVPF 269
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 324 LRERFT*ADVRIANPAIISIA*KTGRSPHDYL 229
LRER D + N A+ I R+P +YL
Sbjct: 177 LRERLDDPDTSVVNAAVSVICELARRAPKNYL 208
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 23.8 bits (49), Expect = 7.3
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -2
Query: 289 CKPRYNLHCLKNW 251
CK ++ HC++NW
Sbjct: 52 CKHIFHAHCIQNW 64
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 23.4 bits (48), Expect = 9.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 219 GAGEGSRAEIDQFFRQW 269
G E +RAE+D F+ W
Sbjct: 207 GTIESTRAEVDNFYNFW 223
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 23.4 bits (48), Expect = 9.6
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 6 NMIKLCLLAVIAVCNVRAFYSSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVS 176
+MI L ++ + N+R+ S Y + G K L +YT S D++VV+
Sbjct: 361 SMIVKNSLYIVDISNIRSNNISPKVYAKDFNGLQAAKVDLPGPINSYTISSDRSVVA 417
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = -3
Query: 93 LSCCTRGQRNKTL-ARCRP 40
LSCCT G N L ++C P
Sbjct: 1236 LSCCTEGSINALLNSKCLP 1254
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 140 FLKKLQRSFVNGIA*GCP 87
+LKK+ RSF NG G P
Sbjct: 66 YLKKVHRSFKNGFRAGKP 83
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 160 SFDDVYVSLRNCKEVLSMASPKAVLLYSW 74
+ DD++ S+ N K + P AVL W
Sbjct: 192 AIDDMFSSIYNSKNKSTFYGPTAVLNLMW 220
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 23.4 bits (48), Expect = 9.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 280 RYNLHCLKNWSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSLRNCKEVL 113
RY + KN SIS L S R + + + +L+ DD+ +N KE+L
Sbjct: 486 RYLKNYKKNTSISEYLLSSQ----RDVMLAVEHSLLLLYLNMDDLAAGTKNAKELL 537
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,880
Number of Sequences: 5004
Number of extensions: 26717
Number of successful extensions: 102
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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