Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_H11
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0338 + 7426999-7428322,7428390-7428646 29 0.70
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 29 0.70
05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023 28 1.6
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 28 2.1
08_02_1378 + 26536082-26537803 27 2.8
03_06_0584 + 34909800-34910261 27 2.8
05_01_0461 - 3655636-3656433 27 5.0
03_06_0238 - 32570222-32570330,32570538-32570599,32570658-325708... 27 5.0
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 26 6.6
01_01_0418 - 3142659-3145622 26 6.6
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 26 8.7
11_01_0355 + 2679561-2680985,2681183-2682295 26 8.7
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 26 8.7
05_01_0448 + 3566151-3567380,3567877-3568188,3568318-3568455 26 8.7
02_04_0650 + 24728700-24728725,24729582-24729660,24729802-247298... 26 8.7
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 240 HDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTFP 136
H+YLH+ + E + +SRLMV+ +C ++ + P
Sbjct: 379 HNYLHKERNDLERIYNSRLMVQHTRNCVTLPHRNP 413
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 29.5 bits (63), Expect = 0.70
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -2
Query: 238 RLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSLRNCKEVLSMASPKAVLLYSWSE 68
R+P P P L+ ++S+I L+F Y + C + + + P+ L W +
Sbjct: 40 RIPLPGPPLFYNVSLIMSRRSRCVLLAFGYAYPAY-ECYKTVELNKPEIEQLIFWCQ 95
>05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023
Length = 620
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 292 DCKPRYNLHCLKNWSISARLPSPAPALYRSISI 194
DC+ + +CL N + LP P P L RS S+
Sbjct: 71 DCEDIVSTYCLVNSEEQSFLPEPQPLLSRSQSV 103
>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 298 CTDCKPRYNLHCLKNWSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSL 134
CT+C + + L + +LPS PAL+ + + +P+ T D+Y+ L
Sbjct: 1263 CTNCLTKL-VGRLSEEELMTQLPSFLPALFDAFNNQSPDVRKTVVFCLVDIYIML 1316
>08_02_1378 + 26536082-26537803
Length = 573
Score = 27.5 bits (58), Expect = 2.8
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Frame = -2
Query: 280 RYNLHCLKNWSISA-RLPSPAPALYRSISIITPNGEDTTFLSFDDV--------YVSLRN 128
R+ L C WS++ R P P L ++ T ++ +D+ + SLR
Sbjct: 201 RFLLRCASKWSLTTGRFPLP---LIAALVAFAAEANGVTSITVEDIARDISARLHTSLRR 257
Query: 127 CKEVLSMASPKAVLLYSWSEE*NARTL 47
KE++ A L W + NA+ L
Sbjct: 258 YKELVDALVRVARELLPWGADVNAKNL 284
>03_06_0584 + 34909800-34910261
Length = 153
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 244 SARLPSPAPALYRSISIITPNGEDTTFLSFDDVYV 140
S +L A A Y+ + +ITP G++ F + DD Y+
Sbjct: 48 SKKLDVSAMATYK-VKLITPEGQEHEFEAPDDTYI 81
>05_01_0461 - 3655636-3656433
Length = 265
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 256 NWSISARLPSPAPALYRSI-SIITPNGEDTTFL 161
N +A P+PAPA ++I +I+T G+ T FL
Sbjct: 26 NGQAAAAAPAPAPAAPKTITAILTKAGQFTKFL 58
>03_06_0238 -
32570222-32570330,32570538-32570599,32570658-32570883,
32571165-32571532,32571644-32571743,32571817-32571879,
32573077-32573123,32573222-32573353
Length = 368
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 295 TDCKPRYNLHCLKNWSISARLPSPAPALYRSISIITPNGED 173
T CK Y+L C+ W + S P ++ IS+ P ++
Sbjct: 46 TSCKHEYHLQCILEW---CQRSSQCPMCWQPISMKDPMSQE 83
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 26.2 bits (55), Expect = 6.6
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 162 KNVVSSPLGVMMLMLLYKAGAGEGSRAEIDQFFRQWRL*RGLQS-VHQLK*NVLGDESG 335
+NV SPL + + + L AGAG +R ++ GL + QL VL D SG
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADASG 93
>01_01_0418 - 3142659-3145622
Length = 987
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -3
Query: 288 ANPAIISIA*K--TGRSPHDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTFP*ETAKK 118
AN I+ +A +G H +L R + E +S+ L+++ QH+ S Y F A K
Sbjct: 740 ANLRILDLASNNFSGTLHHKWLKRLKSMMETSSSATLLMQYQHNVHSTTYQFSTSIAYK 798
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 298 CTDCKPRYNLHCLKNW 251
C C +Y+ CLKNW
Sbjct: 158 CKLCNKKYHRSCLKNW 173
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 328 SSPRTFYLS*CTDCKPRYNLHCLKNWSISARLPSP 224
SSP +S T C N+ K W + AR P P
Sbjct: 500 SSPSPSSISGYTSCYNNNNMMSSKPWQLEARQPWP 534
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 190 TPNGEDTTFLSFDDV 146
TPNG D T L +DDV
Sbjct: 251 TPNGGDKTVLQYDDV 265
>05_01_0448 + 3566151-3567380,3567877-3568188,3568318-3568455
Length = 559
Score = 25.8 bits (54), Expect = 8.7
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 33 VIAVC--NVRAFYSSDHEYNRTALGDAID---KTSLQFLKETYTSSKDKNVVSSPLGVMM 197
V+A C ++ ++D E T G + K+ +K+ + V LG M
Sbjct: 255 VLATCKDDLLQALAADDELRHTVAGFDVKGRYKSRFSAMKKLVKDGRRPEDVHDILG-MR 313
Query: 198 LMLLYKAGAGEGSRA 242
++L ++AGAG+G RA
Sbjct: 314 VILDHRAGAGDGHRA 328
>02_04_0650 +
24728700-24728725,24729582-24729660,24729802-24729889,
24730216-24730297,24731083-24731278,24731432-24731816,
24733332-24734428,24734621-24734886,24735565-24735631,
24735722-24735772,24736033-24736123,24736239-24736345
Length = 844
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 201 LASSRLMVKTQHSCPSM 151
L SS+L++K H+CPS+
Sbjct: 228 LPSSQLLIKEPHTCPSI 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,321,614
Number of Sequences: 37544
Number of extensions: 184481
Number of successful extensions: 484
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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