Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H11
         (338 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46794-2|CAA86774.1|  950|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AC006713-4|AAK68404.1|  321|Caenorhabditis elegans Hypothetical ...    26   7.9  

>Z46794-2|CAA86774.1|  950|Caenorhabditis elegans Hypothetical
           protein R06F6.2 protein.
          Length = 950

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = -2

Query: 289 CKPRYNLHCLKNWSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSLRNCKEVLS 110
           CK  Y++HC +++++      PA    R     T   E+ ++  F        N  E+++
Sbjct: 789 CKHAYHVHCFESYNMDGSDKCPACQTTRD----TTRDEEISYHKFQKELAEASNGMELIA 844

Query: 109 M 107
           M
Sbjct: 845 M 845


>AC006713-4|AAK68404.1|  321|Caenorhabditis elegans Hypothetical
           protein Y119D3A.1 protein.
          Length = 321

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = +3

Query: 42  VCNVRAFYSSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKAG 221
           VC VR+  + +  Y +TAL D I   +     E Y SS +K   S+ LG  +      AG
Sbjct: 84  VCRVRSTKTFEGNYLQTALND-IKMIAKNNATELYFSSLEK---SNKLGASLYEDSENAG 139

Query: 222 AGE 230
           A E
Sbjct: 140 AEE 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,863,704
Number of Sequences: 27780
Number of extensions: 155250
Number of successful extensions: 442
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)