Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_H10
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0120 + 26622285-26622433,26623156-26623219,26623310-266233... 30 0.78
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 29 2.4
07_01_0504 + 3756714-3757054,3757205-3757259,3757403-3757477,375... 28 4.2
12_02_0503 - 19756561-19757991,19758606-19759967 27 5.5
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 27 7.3
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790... 27 7.3
12_02_0771 - 23013984-23014358,23015168-23015980 27 9.6
11_07_0012 + 27346844-27346949,27347152-27347756 27 9.6
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 27 9.6
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 27 9.6
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 27 9.6
09_02_0269 - 6527150-6527754,6527957-6528062 27 9.6
07_01_0993 - 8377720-8377800,8379924-8380406,8380622-8381132,838... 27 9.6
04_03_0612 + 18023354-18023916,18024046-18024805 27 9.6
>01_06_0120 +
26622285-26622433,26623156-26623219,26623310-26623399,
26623588-26623644,26623832-26623880,26624320-26624396,
26624918-26624957,26625037-26625131,26625525-26625689,
26625777-26625887,26625971-26626058,26626715-26626781,
26626955-26627063,26627155-26627272,26628345-26628590,
26628956-26629095,26629262-26629444,26629560-26629679,
26629932-26629967
Length = 667
Score = 30.3 bits (65), Expect = 0.78
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -2
Query: 300 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQI 133
P GSM I+ N S EY++V + +IY L +++ S + G S F+SF++ +
Sbjct: 516 PDGSMKIIDRKKNIFKLSQGEYVAVENLENIYGLVSAIDSIWVYGNS--FESFLVAV 570
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 155 NYVLQPTVYEDIKEVAREYMLEENTDKYSKSDV-VTKFMETFKMGMLPRGEVFVH 316
N VL+P I+ +ARE+M++ K DV + KF + M L + +H
Sbjct: 939 NIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMMNELAQQAADLH 993
>07_01_0504 +
3756714-3757054,3757205-3757259,3757403-3757477,
3757638-3757729,3757914-3757995,3758138-3758221,
3758326-3758445
Length = 282
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 369 KYSMRKTLTACSICNAFV*TKTSPRGSMPILKV 271
K+ +TACS CN+ KT + +M +LKV
Sbjct: 209 KWEWENLVTACSRCNSRKGQKTVEQANMKLLKV 241
>12_02_0503 - 19756561-19757991,19758606-19759967
Length = 930
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +1
Query: 235 VLEIR-CCYEIHGDLQNGHATAW*GL-RSHKC 324
VL+I CC E+HG+ Q+G + W + R H C
Sbjct: 894 VLDINGCCNELHGECQSG-GSEWSKICRIHSC 924
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 185 DIKEVAREYMLEENTDKYSKSDVVT 259
DIK+V ++ ++E N D+Y DV T
Sbjct: 232 DIKKVLKDILIEVNKDRYMVLDVST 256
>01_07_0016 - 40476014-40476333,40476598-40476740,40476945-40479099,
40479205-40480047,40480176-40480269,40480356-40481207,
40481367-40481437,40481750-40481821,40481977-40482019
Length = 1530
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 136 LHHETLELRTAANCVRGHQGSREGIYAGG 222
LHH+ L+ + AN +R H G E + G
Sbjct: 1001 LHHDQLQSQQLANALRQHAGREEERHLSG 1029
>12_02_0771 - 23013984-23014358,23015168-23015980
Length = 395
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 191 KEVAREYMLEENTDKYSKSDVVTKFME 271
+E EY L EN D YS S + K ME
Sbjct: 98 EERINEYELSENIDNYSFSSYLPKSME 124
>11_07_0012 + 27346844-27346949,27347152-27347756
Length = 236
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +3
Query: 216 WRKTRT--STRNPML-LRNSWRPSKWACYRVVRSSFTQMRCKWNRPLKFSAYCTS 371
WR TR +TR M RN + P Y + SSFT++ +W R SA S
Sbjct: 139 WRLTRGRGATRGTMAGERNGYSPFPLR-YLPLASSFTKLTARWGRGAACSAAAES 192
>11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 191 KEVAREYMLEENTDKYSKSDVVTKFME 271
+E EY L EN D YS S + K ME
Sbjct: 939 EERINEYELSENIDNYSFSSYLPKSME 965
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 191 KEVAREYMLEENTDKYSKSDVVTKFME 271
+E EY L EN D YS S + K ME
Sbjct: 550 EERINEYELSENIDNYSFSSYLPKSME 576
>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/44 (22%), Positives = 25/44 (56%)
Frame = +2
Query: 98 DSLMKADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEENT 229
+ L ++K+KE+C + L +++++++ E+ L EN+
Sbjct: 894 EDLQIMNLKLKEVCAKNEVEKALLSEKVQEVEKLSEEFSLMENS 937
>09_02_0269 - 6527150-6527754,6527957-6528062
Length = 236
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +3
Query: 216 WRKTRT--STRNPML-LRNSWRPSKWACYRVVRSSFTQMRCKWNRPLKFSAYCTS 371
WR TR +TR M RN + P Y + SSFT++ +W R SA S
Sbjct: 139 WRLTRGRGATRGTMAGERNGYSPFPLR-YLPLASSFTKLTARWGRGAACSAAAES 192
>07_01_0993 -
8377720-8377800,8379924-8380406,8380622-8381132,
8381174-8381586
Length = 495
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 255 LRNSWRPSKWACYRVVRSSFTQMRCKWNRPLKFSAYCTSPRTMTTSS 395
L R + A YR + +S + R +AYC SP T SS
Sbjct: 83 LMEGLRTTGSAAYRALLASLVVRAAAYGRASSPTAYCRSPSTSPRSS 129
>04_03_0612 + 18023354-18023916,18024046-18024805
Length = 440
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = -2
Query: 282 ILKVSMNFVTTSDFEYLSVFSSSIYSLATSLMSSYTVGCST*FKSFM 142
I+++ TSD LS+ S +Y++ ++ +GC + F+
Sbjct: 9 IIEILKKITRTSDLNSLSLVSKQLYTIDAEQRAAIRLGCGLATEDFL 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,947,226
Number of Sequences: 37544
Number of extensions: 251566
Number of successful extensions: 688
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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