Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H08
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   3.1  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    26   3.1  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   7.2  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   7.2  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   9.5  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        25   9.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 287 PPTSLTKTVTRPREATSPSVLRSQSTLPA 373
           PPTS + T T P  A++ S   S S LP+
Sbjct: 306 PPTSTSSTSTPPPPASTSSTGTSSSPLPS 334


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 160 FETGNGIYAAADGVVKDFNSEYPSLEIKGAYKYTAPDGTP 279
           FE   G+Y     +V DFNS YPS+  +    +T  D +P
Sbjct: 831 FEPQKGLYETCI-LVMDFNSLYPSIIQEYNICFTTVDRSP 869


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 327 SRGLVTVFVSDVGGFYWCTIGSGVFVSTLDFERW 226
           ++GLV + V   G  +   IGSG+ V+ LD   W
Sbjct: 46  AKGLVIMTVLKAGFLFSGRIGSGLIVARLDDGTW 79


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 160 FETGNGIYAAADGVVKDFNSEYPSLEIKGAYKYTAPD 270
           FE  +G+  +++G    F    P+L   G   Y+ PD
Sbjct: 351 FEPNSGLGTSSEGASSSFPDVDPNLAQNGVPYYSLPD 387


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 279 WCTIGSGVFVSTL 241
           WC IG G FVS L
Sbjct: 751 WCNIGEGFFVSML 763


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 477 IYTISVNGTRRLLNLDFLVYFWCYLGSMGSDVGKTAGNVL 358
           +YT S+   + + N  F+++  CYLG     +    G V+
Sbjct: 134 VYTASLLCYKHVYNRGFVIFGGCYLGLTAGMLWAAQGAVI 173


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 121 SYDITPEGNFQYNFETGNG 177
           SY++   GNFQY + T  G
Sbjct: 110 SYNLAGGGNFQYQYSTCQG 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,644
Number of Sequences: 5004
Number of extensions: 36313
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)