Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H08
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    31   0.78 
03_05_0757 + 27478425-27479016,27479202-27479277,27479366-274794...    30   1.4  
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854...    29   2.4  
01_06_0352 + 28638453-28639391,28639486-28640034,28640388-286411...    28   4.1  
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880...    28   5.5  
07_01_0616 + 4560866-4560952,4561144-4561208,4564481-4564913,456...    28   5.5  
10_08_0321 + 16729177-16729464                                         27   7.2  
03_06_0317 + 33097257-33097336,33098500-33098926,33100007-331000...    27   7.2  
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164...    27   7.2  
01_06_1316 + 36245368-36245507,36247229-36247315,36248334-362484...    27   7.2  
09_03_0085 - 12209697-12210457,12212823-12213255                       27   9.6  
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907     27   9.6  

>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
            31678677-31678715
          Length = 1885

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 227  HLSKSRVLTNTPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQS 361
            HLSK  +  N PL  VH   PP+S+   ++  + +T P+V  S S
Sbjct: 1089 HLSKLTIY-NCPLSCVHSSLPPSSIVSKLSIGKVSTLPTVRGSSS 1132


>03_05_0757 +
           27478425-27479016,27479202-27479277,27479366-27479481,
           27481043-27481608
          Length = 449

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = +2

Query: 290 PTSLTKTVTRPREATSPSVLRSQSTLPAVLPTSLPILPK 406
           P SL  T T PR A  P  + S STL A  PT  P  P+
Sbjct: 43  PASLF-TTTSPRRALPPLFVESSSTLSAPPPTPPPSPPR 80


>02_05_1273 +
           35381626-35382486,35382567-35382691,35384851-35385450,
           35385550-35385841,35386199-35386364,35386664-35386707,
           35386866-35386979,35387171-35387290,35387541-35387626,
           35388340-35388502
          Length = 856

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 230 LSKSRVLTNTPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQSTL 367
           L + R L N  LP+  + +PP+   + + + R++   S LRS+S +
Sbjct: 289 LLRGRFLRNVVLPVEEEERPPSVAARELGQLRQSHRVSTLRSESAV 334


>01_06_0352 +
           28638453-28639391,28639486-28640034,28640388-28641195,
           28641279-28641389,28641556-28641683
          Length = 844

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 123 GGLDDGSDVFVLADDMGNVSAGASHGYGEDY*EF 22
           G   DGS  F   DD G    GA   + E+  EF
Sbjct: 338 GSTVDGSTAFAAGDDFGEAQEGAEDEWAEETEEF 371


>12_01_0906 +
           8799284-8799441,8800865-8801690,8801933-8802055,
           8802144-8802210,8802611-8802714,8802798-8802900,
           8803103-8803401,8804009-8804263,8805471-8805776,
           8805866-8806194,8806829-8806916,8807027-8807164,
           8807438-8807458
          Length = 938

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 287 PPTSLTKTVTRPREATSPSVL-RSQSTL 367
           PPTS T+    P   TSPS L R QS+L
Sbjct: 894 PPTSTTRPSFPPTSTTSPSFLGRGQSSL 921


>07_01_0616 +
           4560866-4560952,4561144-4561208,4564481-4564913,
           4565634-4565786,4565875-4565946,4567602-4567712,
           4568344-4568584,4568743-4568821,4568892-4569018
          Length = 455

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 230 LSKSRVLTNTPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQS 361
           L K+ V+   P+P  +Q  PP  +      P  A SP + R +S
Sbjct: 280 LRKNLVIRAKPMPSFYQEGPPPKVELKKVPPTRAKSPKLTRRKS 323


>10_08_0321 + 16729177-16729464
          Length = 95

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 194 SAAA*IPLPVSKLYWKLPSGVMS 126
           SAA   P PV +LYWKL S + S
Sbjct: 32  SAAVAAPRPVRQLYWKLRSRLRS 54


>03_06_0317 +
           33097257-33097336,33098500-33098926,33100007-33100078,
           33100490-33100600,33100973-33101173,33102157-33102222
          Length = 318

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 230 LSKSRVLTNTPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQS 361
           L KS V+   P+P  +Q  PP         P  A SP   R +S
Sbjct: 203 LRKSLVIRAKPMPSFYQEGPPPKAELKKVPPTRAKSPKFTRRRS 246


>03_01_0208 +
           1642041-1642118,1642200-1642310,1643157-1643318,
           1643433-1643600,1643683-1643843,1643930-1643991,
           1644078-1644127,1644247-1644653,1644760-1644895
          Length = 444

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 156 VLEVTFRCNVVGGLDDGSDVFVLADDMGNVSAGASHGYG 40
           ++ V FRC+ V    D S   V+ DDM  V A   + +G
Sbjct: 360 LVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWG 398


>01_06_1316 +
           36245368-36245507,36247229-36247315,36248334-36248439,
           36249028-36249204,36249296-36249375,36249432-36249440,
           36249474-36249566,36249788-36249947
          Length = 283

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 124 YDITPEGNFQYNFETGNG-IYAAADGVVKDFN-SEYPSLEIKGAYKYTAPDGTPVE 285
           +D T E N  ++FE G G +  A D  VK     E   +  K  Y Y A  G+P E
Sbjct: 139 FDTTHEDNSVFSFEIGEGTVIKAWDIAVKTMKVGEVAKITCKPEYAYGAA-GSPPE 193


>09_03_0085 - 12209697-12210457,12212823-12213255
          Length = 397

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 369 GNVLWDLRTDGEVASRGLVTVFVSDVGGFYWCTIGSG 259
           GN  W L  D  VA R    VFV ++ GF++  +G G
Sbjct: 82  GNHHWMLSRDALVA-RLDARVFVFEMPGFFYAVVGGG 117


>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
          Length = 794

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 393 GSDVGKTAGNVLWDLRTDGEVASRGLVTVFVSDV 292
           GSDVGK    VL D+ ++ EV+S      F  +V
Sbjct: 483 GSDVGKNVSAVLDDVFSEPEVSSEAKTDTFSVEV 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,413,843
Number of Sequences: 37544
Number of extensions: 253419
Number of successful extensions: 855
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)