SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H08
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical pr...    31   0.53 
U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AF043702-3|AAK21496.2|  474|Caenorhabditis elegans Hypothetical ...    31   0.53 
AF022982-1|AAB69937.1|  224|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z82084-6|CAJ85781.1|  156|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U29537-1|AAK31507.1|  610|Caenorhabditis elegans Vaccinia relate...    29   2.8  
AF100306-1|AAC68921.1|  423|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z95310-2|CAB08563.1|  394|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z83104-6|CAB05479.1|  394|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    28   3.7  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z72514-3|CAA96673.1|  741|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z82272-5|CAB05220.1|  341|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81473-8|CAB03899.2|  418|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81473-4|CAB03891.1|  463|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL031636-1|CAA21046.2|  418|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical
           protein F49E10.2a protein.
          Length = 790

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 24/111 (21%), Positives = 34/111 (30%)
 Frame = +2

Query: 74  PMSSAKTNXXXXXXXXXXXXXXKVTSSTTLRLVTEXXXXXXXXXXXXXXXXHLSKSRVLT 253
           P +S  +                 TS+TT    T                   S +   T
Sbjct: 585 PTTSTSSTTTQKPSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTSTTATTT 644

Query: 254 NTPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQSTLPAVLPTSLPILPK 406
             P       KP T  T+T T P   T       + T P  +PT+ P +P+
Sbjct: 645 PQPTTTTTSEKPVTLTTQTWTAPPTTTV------KRTTPQTVPTTTPKIPR 689


>U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical
           protein F49E10.2b protein.
          Length = 842

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 24/111 (21%), Positives = 34/111 (30%)
 Frame = +2

Query: 74  PMSSAKTNXXXXXXXXXXXXXXKVTSSTTLRLVTEXXXXXXXXXXXXXXXXHLSKSRVLT 253
           P +S  +                 TS+TT    T                   S +   T
Sbjct: 585 PTTSTSSTTTQKPSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTSTTATTT 644

Query: 254 NTPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQSTLPAVLPTSLPILPK 406
             P       KP T  T+T T P   T       + T P  +PT+ P +P+
Sbjct: 645 PQPTTTTTSEKPVTLTTQTWTAPPTTTV------KRTTPQTVPTTTPKIPR 689


>AF043702-3|AAK21496.2|  474|Caenorhabditis elegans Hypothetical
           protein W03D8.1 protein.
          Length = 474

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 284 KPPTSLTKTVTRPREATSPSVLRSQSTLPAVLPTSLP 394
           +PPT+ T T T P  AT P+   + +    V  T+ P
Sbjct: 218 EPPTTTTSTTTEPTTATDPTTTTTTTEATTVTSTTTP 254


>AF022982-1|AAB69937.1|  224|Caenorhabditis elegans Hypothetical
           protein T23B12.5 protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 495 SWQCRYIYTISVNGTRRLLNLDFLVYFWCYL 403
           SW CR +Y  SV+   RLLNL     FW +L
Sbjct: 25  SWGCRIVYLPSVS---RLLNLPLERIFWNFL 52


>Z82084-6|CAJ85781.1|  156|Caenorhabditis elegans Hypothetical
           protein ZK1053.7 protein.
          Length = 156

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 238 IKGAYKYTAPDGTPVETTYVAXENGYQAS 324
           IK  Y Y   DGTP+  TY    NGY  S
Sbjct: 112 IKDTYSYDNVDGTPISCTYYPL-NGYVES 139


>U29537-1|AAK31507.1|  610|Caenorhabditis elegans Vaccinia related
           kinase protein 1 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 311 VTRPREATSPSVLRS-QSTLPAVLPTSLPILPK*HQKYTRKSKFNKRLVPLTLIV 472
           VT P  A S S  RS +  L +   +S  +  K  QKY R S     LVP+T+ V
Sbjct: 446 VTTPSSAASTSRSRSIRLGLTSSTASSNKVAKKIEQKYKRLSMNKSSLVPVTISV 500


>AF100306-1|AAC68921.1|  423|Caenorhabditis elegans Hypothetical
           protein T24C4.2 protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/32 (53%), Positives = 18/32 (56%)
 Frame = +2

Query: 290 PTSLTKTVTRPREATSPSVLRSQSTLPAVLPT 385
           P  L   VTRP E  SPS   S+ T P VLPT
Sbjct: 231 PVDLHYEVTRPYEV-SPSAPISEITTPFVLPT 261


>Z95310-2|CAB08563.1|  394|Caenorhabditis elegans Hypothetical
           protein F09B12.5 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 1/124 (0%)
 Frame = +2

Query: 62  ALTFPMSSAKTNXXXXXXXXXXXXXXKVTSSTTLRLVTEXXXXXXXXXXXXXXXXHLSKS 241
           A T  +S++ +                 T++TT+                          
Sbjct: 188 ATTTTISNSLSTTTVVKSTTTLPISTTTTTTTTITPKHTNLTTTATTTKKVTTTERAHLE 247

Query: 242 RVLTNTPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQSTLPA-VLPTSLPILPK*HQK 418
            +L   PL    Q    TS +   T+P   +  S     STLPA VLP +    P  H  
Sbjct: 248 NILLTIPLKSTTQSPALTSSSAKPTKPPTTSETSKPTFPSTLPAYVLPMTTTSHPSTHTT 307

Query: 419 YTRK 430
            T+K
Sbjct: 308 TTQK 311


>Z83104-6|CAB05479.1|  394|Caenorhabditis elegans Hypothetical
           protein F09B12.5 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 1/124 (0%)
 Frame = +2

Query: 62  ALTFPMSSAKTNXXXXXXXXXXXXXXKVTSSTTLRLVTEXXXXXXXXXXXXXXXXHLSKS 241
           A T  +S++ +                 T++TT+                          
Sbjct: 188 ATTTTISNSLSTTTVVKSTTTLPISTTTTTTTTITPKHTNLTTTATTTKKVTTTERAHLE 247

Query: 242 RVLTNTPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQSTLPA-VLPTSLPILPK*HQK 418
            +L   PL    Q    TS +   T+P   +  S     STLPA VLP +    P  H  
Sbjct: 248 NILLTIPLKSTTQSPALTSSSAKPTKPPTTSETSKPTFPSTLPAYVLPMTTTSHPSTHTT 307

Query: 419 YTRK 430
            T+K
Sbjct: 308 TTQK 311


>Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical protein
            ZK512.5 protein.
          Length = 1232

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +2

Query: 233  SKSRVLTNTPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRS---QSTLPAVLPTSLPIL 400
            S++  LT++ LP      PP SL KT+ +P  +T P + ++   + T PA++   +P L
Sbjct: 905  SRTSTLTSSTLP------PPPSLPKTIEKP-ISTPPPISKNVVPEMTPPAIVKPPMPTL 956


>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/86 (20%), Positives = 31/86 (36%)
 Frame = +2

Query: 146 TSSTTLRLVTEXXXXXXXXXXXXXXXXHLSKSRVLTNTPLPMVHQ*KPPTSLTKTVTRPR 325
           T+ TT++                     +  +     TP  M      PT+ T   + P 
Sbjct: 163 TTPTTIKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 222

Query: 326 EATSPSVLRSQSTLPAVLPTSLPILP 403
             T+P+ ++S  T P   PT++   P
Sbjct: 223 TPTTPTTMKSTPTTPTT-PTTMKSTP 247



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/86 (20%), Positives = 31/86 (36%)
 Frame = +2

Query: 146 TSSTTLRLVTEXXXXXXXXXXXXXXXXHLSKSRVLTNTPLPMVHQ*KPPTSLTKTVTRPR 325
           T+ TT++                     +  +     TP  M      PT+ T   + P 
Sbjct: 264 TTPTTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 323

Query: 326 EATSPSVLRSQSTLPAVLPTSLPILP 403
             T+P+ ++S  T P   PT++   P
Sbjct: 324 TPTTPTTMKSTPTTPTT-PTTMKSTP 348



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/86 (20%), Positives = 31/86 (36%)
 Frame = +2

Query: 146 TSSTTLRLVTEXXXXXXXXXXXXXXXXHLSKSRVLTNTPLPMVHQ*KPPTSLTKTVTRPR 325
           T+ TT++                     +  +     TP  M      PT+ T   + P 
Sbjct: 277 TTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 336

Query: 326 EATSPSVLRSQSTLPAVLPTSLPILP 403
             T+P+ ++S  T P   PT++   P
Sbjct: 337 TPTTPTTMKSTPTTPTT-PTTMKSTP 361



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 257 TPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQSTLPAVLPTSLPILP 403
           TP  M      PT+ T   + P   T+P+ ++S  T P   PT++   P
Sbjct: 213 TPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTT-PTTMKSTP 260



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 257 TPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQSTLPAVLPTSLPILP 403
           TP  M      PT+ T   + P   T+P+ ++S  T P   PT++   P
Sbjct: 226 TPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTT-PTTMKSTP 273



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 257 TPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQSTLPAVLPTSLPILP 403
           TP  M      PT+ T   + P   T+P+ ++S  T P   PT++   P
Sbjct: 239 TPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTT-PTTMKSTP 286



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 257 TPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQSTLPAVLPTSLPILP 403
           TP  M      PT+ T   + P   T+P+ ++S  T P   PT++   P
Sbjct: 327 TPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTT-PTTMKSTP 374



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 257 TPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQSTLPAVLPTSLPILP 403
           TP  M      PT+ T   + P   T+P+ ++S  T P   PT++   P
Sbjct: 340 TPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTT-PTTMKSTP 387



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 257 TPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQSTLPAVLPTSLPILP 403
           TP  M      PT+ T   + P   T+P+ ++S  T P   PT++   P
Sbjct: 353 TPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTT-PTTMKSTP 400


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 293 TSLTKTVTRPREATSPSVLRSQSTLPAVLPTSLPI 397
           TSL  T+T P    + +V+ S +T+P   PT++ +
Sbjct: 569 TSLLTTLTTPTVPVTTTVVPSSATVPTTPPTTVTV 603


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 293 TSLTKTVTRPREATSPSVLRSQSTLPAVLPTSLPI 397
           TSL  T+T P    + +V+ S +T+P   PT++ +
Sbjct: 625 TSLLTTLTTPTVPVTTTVVPSSATVPTTPPTTVTV 659


>Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical
           protein T06G6.8 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 233 SKSRVLTNTPLPMVHQ*KPPTSLTKTVTRPREATSPSVLRSQSTLPAVLPTSLPILP 403
           S++R LT+T        K PT+ + T   P+ +T PS   +   L    P  LP  P
Sbjct: 241 SRTRSLTSTSTTTA---KLPTTTSTTFAAPQASTEPS--EATEALATATPADLPTKP 292


>Z72514-3|CAA96673.1|  741|Caenorhabditis elegans Hypothetical
           protein T10B10.3 protein.
          Length = 741

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 239 SRVLTNTPLPMVHQ*KPPTSLT-KTVTRPREATSPSVLRSQSTLPAVLPTSLP 394
           +R L   P P       PT L+ +   R R+ T      SQ T+P V+PT +P
Sbjct: 164 TRQLRAEPAPAAVIDSTPTQLSLRAQARQRKLTEKEA--SQDTVPNVIPTEIP 214


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 169 GNGIYAAADGVVKDFNSEYPSLEIKGAYKYTAPD 270
           G   +    G+V++FN +   LE+ G YK    D
Sbjct: 451 GEAFFEVGLGIVREFNEDVNILELVGLYKRNCVD 484


>Z82272-5|CAB05220.1|  341|Caenorhabditis elegans Hypothetical
           protein F55G11.8 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/61 (22%), Positives = 25/61 (40%)
 Frame = +1

Query: 112 VKSSYDITPEGNFQYNFETGNGIYAAADGVVKDFNSEYPSLEIKGAYKYTAPDGTPVETT 291
           +  + +I P+ N  YN     G   ++   V D       +++K     T  DG+P   T
Sbjct: 244 ISETVEIHPQLNSTYNVTVNGGTRMSSLVAVSDITMHMVDVQMKDESTVTVYDGSPSAFT 303

Query: 292 Y 294
           +
Sbjct: 304 F 304


>Z81473-8|CAB03899.2|  418|Caenorhabditis elegans Hypothetical
           protein Y47H9A.1 protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 109 IVKSSYDITPEGNFQYNFETGNGIYAAADGVVKDFNSEYPSLEIKGAYKYTAPDGTPVET 288
           +VK+ +  T   N    +  G+G   A      + ++++    I  +Y +T PDG+P+  
Sbjct: 229 LVKAYWAQTHLLNISTTYHQGSGPAFALTPKTGENSAKFKYNFINNSYSHTQPDGSPIRL 288

Query: 289 -TYVAXENGYQASGSHLPVGPEIPE 360
             +   E     + S + +  EIPE
Sbjct: 289 FNFNGMERVEDYTESDVFLRREIPE 313


>Z81473-4|CAB03891.1|  463|Caenorhabditis elegans Hypothetical
           protein C17D12.3 protein.
          Length = 463

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 109 IVKSSYDITPEGNFQYNFETGNGIYAAADGVVKDFNSEYPSLEIKGAYKYTAPDGTPVET 288
           +VK+ +  T   N    +  G+G   A      + ++++    I  +Y +T PDG+P+  
Sbjct: 229 LVKAYWAQTHLLNISTTYHQGSGPAFALTPKTGENSAKFKYNFINNSYSHTQPDGSPIRL 288

Query: 289 -TYVAXENGYQASGSHLPVGPEIPE 360
             +   E     + S + +  EIPE
Sbjct: 289 FNFNGMERVEDYTESDVFLRREIPE 313


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 19/88 (21%), Positives = 30/88 (34%)
 Frame = +2

Query: 140 KVTSSTTLRLVTEXXXXXXXXXXXXXXXXHLSKSRVLTNTPLPMVHQ*KPPTSLTKTVTR 319
           K T  TT  +                     S +   T TP+P+      PT  T T T 
Sbjct: 434 KTTIFTTTPVPCPTTTSTTTSATTLVPTTSSSTTTTTTTTPVPVTSTTTEPT--TTTYTT 491

Query: 320 PREATSPSVLRSQSTLPAVLPTSLPILP 403
               ++ + L   ++ P ++    PI P
Sbjct: 492 STSTSTTTTLPPTTSTPKIVVNLTPIYP 519


>AL031636-1|CAA21046.2|  418|Caenorhabditis elegans Hypothetical
           protein Y47H9A.1 protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 109 IVKSSYDITPEGNFQYNFETGNGIYAAADGVVKDFNSEYPSLEIKGAYKYTAPDGTPVET 288
           +VK+ +  T   N    +  G+G   A      + ++++    I  +Y +T PDG+P+  
Sbjct: 229 LVKAYWAQTHLLNISTTYHQGSGPAFALTPKTGENSAKFKYNFINNSYSHTQPDGSPIRL 288

Query: 289 -TYVAXENGYQASGSHLPVGPEIPE 360
             +   E     + S + +  EIPE
Sbjct: 289 FNFNGMERVEDYTESDVFLRREIPE 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,288,737
Number of Sequences: 27780
Number of extensions: 208591
Number of successful extensions: 926
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -