Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H05
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    31   0.22 
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    28   1.2  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   2.7  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   4.7  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   4.7  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   6.3  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   8.3  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   8.3  

>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 517 YYLHDYSLNAHYYYHHLT 570
           +Y   YSLN H +YHHLT
Sbjct: 258 WYSTSYSLNFHLFYHHLT 275


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 445 ICKWKDSTRSCVIRELQSFGQYAKFHRY 362
           +C+  DSTRSCVI +  S   Y+    Y
Sbjct: 366 VCECMDSTRSCVINDDVSSDDYSDLFSY 393


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 316 GYAIPPIYEVLPEYFNNGEILHTAQRI 396
           GY +PP+Y++   +  + E+L  +Q I
Sbjct: 666 GYVLPPVYKITQIHSGDTELLQLSQEI 692


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 445 ICKWKDSTRSCVIRELQSFGQYAKFHRY*NI--PVKPHILEE*RNLLSQNDEC 293
           IC W   T+S    E +     AK+HR+ +I   V+ H   E   L S +D+C
Sbjct: 207 ICLWDVQTQSFTSSETKVISPIAKYHRHTDIVNDVQFHPQHE-ALLASVSDDC 258


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 552 LLSSSDLQQVARRRCSSSIIRETWRMVLVRTQTTCNTLLYGK 677
           L+    LQ  AR  C S      W+ ++ +   T   LLY K
Sbjct: 594 LVQRGSLQDRARIYCLSDDELSKWKTIIYKENLTAENLLYPK 635


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 705 TDFTKSSRKSFHIV-TCYKLFVYEPVPFATSLL 610
           ++ TK     FH+V  CYKL + E  PF   +L
Sbjct: 547 SELTKFQLMPFHMVFECYKLCINEFTPFDLEVL 579


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 384 CPKDWSSRITHDRVLSFHL 440
           CPK WS  I H R  SF +
Sbjct: 501 CPKVWSKIINHPRFESFDI 519


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 421 EYYPSTYKWDNSVVIRSNTTVW 486
           + YP+ + W  + +IRSN   W
Sbjct: 205 QQYPAAFLWSLATLIRSNGIFW 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,496
Number of Sequences: 5004
Number of extensions: 69201
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)