Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H05
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z79756-1|CAB02120.2|  494|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF016450-7|AAB65986.1|  323|Caenorhabditis elegans Serpentine re...    28   5.9  
Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical
           protein ZK909.5 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 196 YSAKDYDTFYKTTVYMKDRVNQDLYIYVLST 288
           YS   Y   +K+ +Y K+R NQ+ YI V+ +
Sbjct: 69  YSETQYWYTFKSDIYRKERTNQEGYIEVMKS 99


>Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical
           protein F36G9.5 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 325 IPPIYEVLPEYFNNGEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSNTTVWHYHC 498
           I PI  +   +  NG   H A  I  +GS M+    + + W N+ ++  NT +W   C
Sbjct: 163 IYPILCIAIMFPGNGFCSHVAYPI--YGSIMLRVTDTMFGWTNNYILMFNTFLWVSIC 218


>Z79756-1|CAB02120.2|  494|Caenorhabditis elegans Hypothetical
           protein F53C11.1 protein.
          Length = 494

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 25  RSFLPQGYVTQ*ELMNETAVKIWIL---MKKQNWLLPLSVPFSPLNPTHQFEAVIMFNV 192
           R F+P G  +        +++ +I    + KQN+     V F+PL PTH +  V+ ++V
Sbjct: 250 RFFVPDGVKSAVTFFCPDSMETYITGLTIVKQNFPGEKFVSFTPLTPTHAYSNVLAYSV 308


>AF016450-7|AAB65986.1|  323|Caenorhabditis elegans Serpentine
           receptor, class t protein70 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 462 Y*VEYYCLALPLPKRFYVLLLT 527
           Y V Y+C+ALPL   F+VL+ T
Sbjct: 15  YGVAYFCIALPLFPVFFVLMKT 36


>Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical
           protein B0334.6 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 124 PLSVPFSPLNPTHQFEAVIMFNVLYSAKDYDTFYKTTVYMKDRVNQDLYIYVLSTLHIHR 303
           PLS+P    + +  F       VLY      TFYK++V +    N + Y+ V+  L+ HR
Sbjct: 102 PLSIPSLAFSTS--FNHFYSRIVLYIRTLASTFYKSSVLIVVAFNIERYLCVVCPLNSHR 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,202,441
Number of Sequences: 27780
Number of extensions: 380094
Number of successful extensions: 890
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)