Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H04
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    26   1.5  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    25   4.4  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   4.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   5.9  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    24   7.8  

>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = +2

Query: 47  QSCPGVSNDGCSVNEVRID-PCNTNHKCVLKQGTVGRMTVNFTPNFDASKVKFGLYWDNG 223
           Q  P +   G  ++ + ID P   N   V  + T    T+   P F A + +  +  +  
Sbjct: 216 QLIPNLRISGARIHSITIDLPIKLNGNAVFSEITYKDGTIA-APEFYAREDELYVCGEFD 274

Query: 224 GDVPFPDLQSDNACEYTTCPL 286
            D P P+L SD   +   C L
Sbjct: 275 -DEPLPELSSDTKVDQDKCAL 294


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -1

Query: 244 VWEGNISAIVPIQA---KFHL*SIEIRCEVNGHAPDRSLFQNAFVI 116
           ++E  I+  +P +    +F L   EIRC ++   P ++  QN FVI
Sbjct: 72  IYENGIAVTLPGEPNLIEFWLPWNEIRCAIHVPCPRKANVQNNFVI 117


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 124  FVIRIARIDSDFVNRAAIIRNPRTGLNFGHSLLGQP 17
            F+++      D  NRA  +  P + L+F   L+GQP
Sbjct: 924  FMVQNKLSAEDVENRATTLDFPASVLDFFQGLMGQP 959


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 242  LGREHLRHCPNTS-QISPLKH 183
            +G+EHL   PNTS + SP K+
Sbjct: 1438 MGKEHLIEAPNTSTKSSPAKN 1458


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 212 WDNGGDVPFPDLQSDNACE-YTTCPL 286
           W   G+ PFP + +DN  E  T  PL
Sbjct: 267 WFQDGEFPFPIIIADNVIEGETVIPL 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,119
Number of Sequences: 5004
Number of extensions: 35473
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)