Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_H04
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632... 30 0.57
01_02_0050 + 10649275-10649655,10649807-10649921,10651003-106510... 29 1.0
06_01_0892 - 6827510-6827590,6829348-6830412 27 5.3
10_08_0488 + 18258178-18258228,18258864-18258926,18259006-182591... 26 7.1
10_07_0195 + 13972656-13972970,13973518-13973848,13975312-139754... 26 9.3
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836... 26 9.3
07_01_1057 + 9284549-9285237,9285334-9285797,9286023-9286556,928... 26 9.3
06_01_0611 + 4420873-4422207 26 9.3
>03_02_0195 -
6325907-6326173,6326996-6327149,6327245-6327336,
6327433-6327534,6328406-6328528,6328635-6328683,
6328759-6328854,6328937-6329276,6329428-6329643,
6329759-6329864,6330144-6330192,6330519-6330792,
6330870-6330960,6331663-6331994,6332084-6332261,
6332815-6332872,6332956-6333089
Length = 886
Score = 29.9 bits (64), Expect = 0.57
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +2
Query: 47 QSCPGVSNDGCS--VNEVRIDPC-NTNHKCVLKQGTVGRMTVNFTPNFDASKVKFGLY-W 214
Q PG+ DGC+ C N N KC+ Q + +++ N K F LY +
Sbjct: 120 QDIPGIRQDGCASYFFHKNFKECANENSKCIRWQKSGNPISITLDGNLQGCKEVFVLYAY 179
Query: 215 DNGGDVP 235
+ G+ P
Sbjct: 180 ETDGNNP 186
>01_02_0050 +
10649275-10649655,10649807-10649921,10651003-10651009,
10651035-10651216,10651318-10651530,10651621-10651688,
10651772-10651846,10651961-10652068,10652413-10652530,
10652652-10652793,10653084-10653140,10653281-10653701,
10654064-10654528
Length = 783
Score = 29.1 bits (62), Expect = 1.0
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 50 SCPGVSNDGCSVNEVRIDPCNTNHKCVLKQGTVGRMTVNFTPNFDASKVKFGLY 211
S P DGC+VN N HKC+ V + N+D+S ++ LY
Sbjct: 103 SGPCCQVDGCTVNLSSARDYNKRHKCIYACDIVLLYLLQNAFNWDSSLIRILLY 156
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 83 PSSHHSKPQDRIEFRP 36
P +HHSKPQ FRP
Sbjct: 73 PYAHHSKPQPAYGFRP 88
>10_08_0488 +
18258178-18258228,18258864-18258926,18259006-18259143,
18259355-18259462,18259691-18259777,18259911-18259961,
18260058-18260129,18260323-18260442,18260695-18260742,
18261060-18261239,18261365-18261454,18261619-18261951
Length = 446
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -1
Query: 220 IVPIQAKFHL*SIEIRCEVNGHAPDRSLFQNAFVIRIARIDSDFVNRAAIIRNP 59
IV + A F L I E GHA Q V + + D + A ++ NP
Sbjct: 161 IVDLSADFRLRDINEYAEWYGHAHRAPELQQEAVYGLTEVLRDEIRNARLVANP 214
>10_07_0195 +
13972656-13972970,13973518-13973848,13975312-13975463,
13975573-13976280,13976424-13976615,13977264-13977425
Length = 619
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 179 FDASKVKFGLYWDNGGDVPFPDLQSDNACEYTTCPLQAGQ 298
FD S ++ +Y D GD+P L+ D E P + Q
Sbjct: 202 FDISGLQLSIYTDADGDLPPVALEDDMIIEIWGLPARVHQ 241
>08_02_1329 -
26182762-26183007,26183149-26183249,26183533-26183602,
26183692-26183895,26186435-26186941,26188672-26188677
Length = 377
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 197 KFGLYWDNGGDVPF 238
KFG WDNGG+VP+
Sbjct: 13 KFG-NWDNGGNVPY 25
>07_01_1057 +
9284549-9285237,9285334-9285797,9286023-9286556,
9286983-9287017
Length = 573
Score = 25.8 bits (54), Expect = 9.3
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +2
Query: 107 CNTNHKC-VLKQGTV-GRMTVNFTPNFDASKVKFGLYWDNGGDVPFPDLQSDNACEYTTC 280
CNT+ C VLK G + + N P + Y D GD P PDL S N T
Sbjct: 481 CNTDEACRVLKLGLLCSHPSANLRPGMR----QVMQYLD--GDTPLPDLTSTNMSFSTMA 534
Query: 281 PLQ 289
+Q
Sbjct: 535 LMQ 537
>06_01_0611 + 4420873-4422207
Length = 444
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 297 CPACRGQVVYSQALSD*RSGKGTSPPLSQ 211
CP CRG V+ + A +D S P+++
Sbjct: 161 CPICRGSVLAAAAAADDDDDSSASTPVAR 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,370,738
Number of Sequences: 37544
Number of extensions: 251687
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -