Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_H03
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 28 1.4
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 1.8
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 27 1.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.4
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 26 4.2
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 26 4.2
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 26 4.2
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 26 5.5
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 5.5
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.7
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 9.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 9.7
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 25 9.7
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 9.7
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 580 SCGKHTTPLTTEPWRSDFCRHIFTLSCMEMKYY 482
SC PL +EP+ C+H F SCM K Y
Sbjct: 836 SCWHCNQPLFSEPFVLFPCQHAFHRSCMLEKTY 868
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 65 HSLITHKMDNNID-HLREQIIVARTEIKNLRQQL 163
H L K NI+ LREQII + I LRQ+L
Sbjct: 480 HLLFQVKEKTNIEAFLREQIITLESSIATLRQEL 513
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 467 FSHMWIIFHFHATESKNVPAKVT---PPRL 547
F + W++ +F +E+ ++PA ++ PP L
Sbjct: 134 FDNFWLVHYFQGSETDSIPANISVAKPPHL 163
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +2
Query: 137 EIKNLRQQLTALKHEHQKEINLIKAVFNDMRCSTCGDTATLSNSDIN--REASTSVEDNF 310
E+K +R +L AL+HE+ ++L + N +T T S D++ ++ T++E NF
Sbjct: 138 ELKQVRSKLAALEHEN-GILSLQLSSSNKKDKNTSSVTTLTSEEDVSYFQKKLTNMESNF 196
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 646 FYYLQVFYLNKRQSNRTGSVRRSCGKHTTPLTTEPWRSDFCRHIFTLSCM 497
FY + Y+ SN T + R C + + E W S F R++++ +CM
Sbjct: 316 FYEMGSLYIPVIYSNHTRTSR--CSQKDAQIYRE-WYSFFPRYVYSTNCM 362
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 257 LSNSDINREASTSVEDNFISYRPIGVLETSF 349
L+ +I++ STSVE + Y P + E +F
Sbjct: 283 LNEPEISKSVSTSVEQSIAEYLPSFIKEAAF 313
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 646 FYYLQVFYLNKRQSNRTGSVRRSCGKHTTPLTTEPWRSDFCRHIFTLSCM 497
FY + +F ++ SNR R C + + E W S F R++++ +CM
Sbjct: 306 FYEMGLFNISVIYSNRIRMSR--CSQKDAQIYQE-WYSFFPRYVYSTNCM 352
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.8 bits (54), Expect = 5.5
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Frame = +2
Query: 83 KMDNNIDHLREQIIVARTEIKNLRQQL--------TALKHE-HQKEINLIKAVFNDMRCS 235
KM+ + RE+ +++I NLR+QL AL+ + Q E +L + + +
Sbjct: 24 KMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEADLSQKHATERQKL 83
Query: 236 TCGDTAT--LSNSDINREASTSVEDNFISYRPIGVLETSFQNKRGVPRQP 379
GD T D+ +ED I+ +++S K P+QP
Sbjct: 84 DKGDEETNETQQEDLLNTLLQQMEDTKITTAEKSSVQSSLNTKENTPQQP 133
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +2
Query: 134 TEIKNLRQQLTALKHEHQKEINLIKAVFNDMRCSTCGDTATLSNSDINREASTSVEDNFI 313
T + N+R+ + L + + +L+K+ N R + T +++D+NR S I
Sbjct: 150 TNLPNVRELVMHLLQSLKYKQSLVKSRLNQSRSNLPQMTREANDNDVNRRNSRGSSQGSI 209
Query: 314 S 316
S
Sbjct: 210 S 210
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 488 FHFHATESKNVPAKVTPPRL 547
F FH E KN AK+ PRL
Sbjct: 350 FRFHTVEPKNNIAKLYDPRL 369
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 107 LREQIIVARTEIKNLRQQLTALKHEHQKEINLIKA 211
L+E+ R E+ N+R A++ Q IN +KA
Sbjct: 48 LQEKNAELRAELDNIRNAQAAIRSSKQTLINKVKA 82
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 497 HATESKNV-PAKVTPPRLGGERRGVFSTRSPHRP 595
HA + N+ P PP G E ++SP+ P
Sbjct: 149 HAPNNSNIQPPSAAPPVPGKENYNAVGSKSPNEP 182
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 646 FYYLQVFYLNKRQSNRTGSVRRSCGKHTTPLTTEPWRSDFCRHIFTLSCM 497
FY + +F + SNR R C + + E W S F R++++ +CM
Sbjct: 260 FYEMGLFNIPVIYSNRIRMSR--CSQKDAQIYQE-WYSFFPRYVYSTNCM 306
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 107 LREQIIVART--EIKNLRQQLTALKHEHQKEINLIKAVFNDMRCST 238
+R+ +++ + E+K LR+ L + + + + +++F D RCST
Sbjct: 949 IRDPVLMEKRNYELKVLREYLFSQESSQLWDDSPYRSIFEDRRCST 994
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,388
Number of Sequences: 5004
Number of extensions: 49254
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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