Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_H03
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0198 + 15528576-15528645,15528746-15528893,15529182-155293... 78 7e-15
07_03_1768 - 29363893-29364010,29364568-29365541 32 0.35
08_02_0349 - 16077063-16077824,16077891-16078102,16078142-160782... 32 0.47
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 31 1.1
10_03_0015 - 7079715-7079898,7080107-7080362,7080858-7081740 30 1.4
04_01_0587 + 7654490-7655095,7655162-7655512,7655911-7656423 30 1.9
06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831 29 2.5
03_05_0010 + 19622430-19622512,19622539-19623082,19623361-196237... 29 2.5
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 29 3.3
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 29 4.3
05_03_0115 - 8544590-8544958,8545408-8545503,8561954-8562505,857... 29 4.3
03_05_0013 - 19718178-19718930,19718997-19719205,19719245-197193... 29 4.3
01_05_0262 - 20137391-20137861,20137937-20138100,20138140-201382... 28 5.7
05_03_0433 - 13972772-13973206 28 7.6
03_03_0244 - 15772156-15773964,15774190-15774711 28 7.6
>09_04_0198 +
15528576-15528645,15528746-15528893,15529182-15529377,
15529512-15529604,15530403-15530462,15530563-15530637,
15531072-15531152,15531262-15531603,15531967-15531999
Length = 365
Score = 77.8 bits (183), Expect = 7e-15
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Frame = +2
Query: 356 KRGVPRQPTVASKAKGTVVIDTGVFNNPEHALSGLEEFSHMWIIFHFHATES-------- 511
+ G PRQP V A+ TV++D P AL GL ++SH WI++ FH
Sbjct: 73 RNGTPRQPLVVPLARATVMLDPA--RVPAEALEGLADYSHCWILYVFHLNTDLDKMWNDP 130
Query: 512 --KNVPAKVTPPRLGGERRGVFSTRSPHRPCSIGLSLVQIE 628
+ AKV PRL G + GV +TRSPHRP IGLS+ ++E
Sbjct: 131 ARSKLKAKVRVPRLKGGKMGVLATRSPHRPNPIGLSVAKVE 171
>07_03_1768 - 29363893-29364010,29364568-29365541
Length = 363
Score = 32.3 bits (70), Expect = 0.35
Identities = 28/103 (27%), Positives = 42/103 (40%)
Frame = +2
Query: 146 NLRQQLTALKHEHQKEINLIKAVFNDMRCSTCGDTATLSNSDINREASTSVEDNFISYRP 325
N +Q T L H HQ A+ ++ R + TL+NS NR S V + I R
Sbjct: 14 NNKQSSTGLLHHHQLPAAADNAILHNTRHPFI--STTLANSFFNRSISARVIHSSICRRL 71
Query: 326 IGVLETSFQNKRGVPRQPTVASKAKGTVVIDTGVFNNPEHALS 454
G + RG+ A G +V+ + + HAL+
Sbjct: 72 EGKVAIVTGGSRGIGEAIVRAFVHHGALVVVADIDDAGGHALA 114
>08_02_0349 -
16077063-16077824,16077891-16078102,16078142-16078204,
16078439-16078865,16078870-16078919,16079006-16079360
Length = 622
Score = 31.9 bits (69), Expect = 0.47
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 125 VARTEIKNLRQQLTALK-HEHQKEIN-LIKAVFNDMRCSTCGDTA-TLSNSDINREASTS 295
V TE+ + L + +H+K IKA+ + + C CG+T T +N RE +
Sbjct: 193 VKETELLAAKPDLLMKRLDDHEKRPQGTIKALDSHVTCEVCGNTGHTRNNCPETREEAMY 252
Query: 296 VEDNFISYRPIG 331
+ +N YRP G
Sbjct: 253 MGNNSSGYRPQG 264
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/87 (27%), Positives = 37/87 (42%)
Frame = +2
Query: 110 REQIIVARTEIKNLRQQLTALKHEHQKEINLIKAVFNDMRCSTCGDTATLSNSDINREAS 289
R+Q + R E L+ +L L+ EH+ L K RC CG AT S++ A+
Sbjct: 393 RQQAVQERHENSLLKSELEKLQDEHRAMRELAK---KPSRCLNCGVVATSSDAAAAATAA 449
Query: 290 TSVEDNFISYRPIGVLETSFQNKRGVP 370
+ E + L+ + RG P
Sbjct: 450 DTREQRLRLEK--AKLKAEIERLRGTP 474
>10_03_0015 - 7079715-7079898,7080107-7080362,7080858-7081740
Length = 440
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 203 IKAVFNDMRCSTCGDTATLSNSDI-NREASTSVEDNFISYRPIGVLE 340
+KA+ + + C CG T N + RE + + N YRP GV++
Sbjct: 251 VKALDSHVTCEVCGSTGHSGNDFLETREEAMYMGSNNNGYRPQGVIQ 297
>04_01_0587 + 7654490-7655095,7655162-7655512,7655911-7656423
Length = 489
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 98 IDHLREQIIVARTEIKNLRQQLTALKHEHQKEINLIKAVFNDMRCSTCGDTATLSNS-DI 274
I+ + +++ A+ ++ L +QL HE + + +KA+ + C CG+T N
Sbjct: 199 IEKMETELLAAKLDL--LMKQLD--DHEKRPQ-GTVKALDSHATCEVCGNTGHFGNDCPE 253
Query: 275 NREASTSVEDNFISYRPIG 331
+RE + + +N YRP G
Sbjct: 254 SREEAMYMGNNNNRYRPQG 272
>06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831
Length = 711
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +2
Query: 104 HLREQIIVARTEIKNLRQQLTALK-HEHQKEIN-LIKAVFNDMRCSTCGDTATLSNS-DI 274
H R IV E+ + L + +H K + IKA+ + + C CG T N
Sbjct: 216 HQRGMHIVKEMELLVAKLDLLMKRLDDHDKRLQGTIKALDSHVTCEVCGGTGHSGNDCPK 275
Query: 275 NREASTSVEDNFISYRPIG 331
RE + + +N YRP G
Sbjct: 276 TREEAMYMGNNNNGYRPQG 294
>03_05_0010 +
19622430-19622512,19622539-19623082,19623361-19623767,
19623831-19624167,19624290-19624508,19625522-19625826,
19626128-19626287,19626422-19626547
Length = 726
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Frame = +2
Query: 107 LREQIIVARTEIKNLRQQLTALKH--EHQK-EINLIKAVFNDMRCSTCGDTATLSNSDIN 277
LR V TE+ + L +KH +H K ++KA+ + + C CG T+ N +
Sbjct: 119 LRGMHTVKETELLATKLNLL-MKHLDDHDKWPQGIVKAMDSHVTCEVCGSTSHSGNDFLE 177
Query: 278 REASTSVEDNFISYRPIG 331
N Y P G
Sbjct: 178 TREEAMYMGNINGYHPQG 195
>04_01_0097 -
998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = +2
Query: 89 DNNIDHLREQIIVARTEIKNLRQQLTALKHEHQKEINLIKA----VFNDMRCSTCGDTAT 256
+N +DH R E+K L+ L E +KE++ ++A V+N +R T
Sbjct: 154 ENTVDHHIHSPRDLRAELKKLKHAYKTLSSEKEKEVSALRAENDFVWNQLRTMENDYTDL 213
Query: 257 LSNSDINREAST 292
L I +T
Sbjct: 214 LKKKKIEAAQAT 225
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 523 CKSHSSKARW*AAWCVFHKISSQTLFYWTVSCSD 624
C +HS AR ++WC K+ Q+L+ VS ++
Sbjct: 227 CSAHSVSARRTSSWCFDEKVLIQSLYKVMVSVAE 260
>05_03_0115 -
8544590-8544958,8545408-8545503,8561954-8562505,
8576247-8576312,8576623-8576694,8576967-8577082,
8577743-8577838,8578498-8578765
Length = 544
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 80 HKMDNNIDHLREQIIVARTEIKNLRQQLTAL 172
H + +DH+R+QI + ++K Q +AL
Sbjct: 73 HALSGEVDHMRDQIETLQDDLKQYEQPFSAL 103
>03_05_0013 -
19718178-19718930,19718997-19719205,19719245-19719325,
19719581-19720613
Length = 691
Score = 28.7 bits (61), Expect = 4.3
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +2
Query: 104 HLREQIIVARTEIKNLRQQLTALK-HEHQKEIN-LIKAVFNDMRCSTCGDTATLSNSDI- 274
H R V TE+ + L + +H K IKA+ + + C CG T N +
Sbjct: 266 HQRGMCFVKETELLAAKLDLLMKRLDDHDKRPQGTIKALDSHVTCEVCGGTGHSGNDCLE 325
Query: 275 NREASTSVEDNFISYRPIGVLET 343
RE + + +N RP GV T
Sbjct: 326 TREDAMYMGNNNNGNRPRGVPAT 348
>01_05_0262 -
20137391-20137861,20137937-20138100,20138140-20138220,
20138437-20138614,20138786-20139164,20139183-20139358
Length = 482
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 203 IKAVFNDMRCSTCGDTATLSNSDI-NREASTSVEDNFISYRPIG 331
+KA+ + + C CG+T N + RE + + +N YRP G
Sbjct: 188 VKALDSHVTCEVCGNTGHSGNDCLETREGAMYMGNNNNGYRPQG 231
>05_03_0433 - 13972772-13973206
Length = 144
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +2
Query: 122 IVARTEIKNLRQQLTALK-HEHQKEI-NLIKAVFNDMRCSTCGDTATLSNS--DINREAS 289
IV TE+ + L + +H K + +KA+ + + C CG+T N + EA
Sbjct: 3 IVKETELLAAKLDLLMKRLDDHDKRPQDTVKALDSHVTCEVCGNTGHSRNDCRETREEAM 62
Query: 290 TSVEDNFISYRPIG 331
+N YRP G
Sbjct: 63 YMGNNNNNGYRPQG 76
>03_03_0244 - 15772156-15773964,15774190-15774711
Length = 776
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +2
Query: 62 LHSLITHKMDNNIDHLREQIIVARTEIKNLRQQLTALKHEHQKEINLIKAVFNDMRCSTC 241
L L +M+ ID E ++A+T QL K HQK ++ +K V +MR +
Sbjct: 241 LAQLRAQEMEQGIDD--EASVIAQT-------QLAVAKERHQKAVDELKLVKEEMRSTHE 291
Query: 242 GDTATLSNSDI 274
T S DI
Sbjct: 292 KHTVLASERDI 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,528,596
Number of Sequences: 37544
Number of extensions: 292131
Number of successful extensions: 764
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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