Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H03
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039048-7|AAB94234.2|  688|Caenorhabditis elegans Hypothetical ...    31   0.96 
U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p...    28   5.1  
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos...    28   5.1  
AL022271-1|CAA18349.1|  919|Caenorhabditis elegans Hypothetical ...    28   6.8  
AC006617-1|AAF39770.2|  397|Caenorhabditis elegans Hypothetical ...    28   6.8  

>AF039048-7|AAB94234.2|  688|Caenorhabditis elegans Hypothetical
           protein F16B4.3 protein.
          Length = 688

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 74  ITHKMDNNIDHLREQIIVARTEIKNLRQQL 163
           I  K+D ++  LRE I ++ TE++NL+ +L
Sbjct: 23  IQRKIDEDLQQLRESISLSTTEVQNLKNKL 52


>U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical
           protein R03H4.5 protein.
          Length = 645

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 56  LFLHSLITHKMDNNIDHLREQIIVARTEIKNLRQQLTALKHE 181
           LFLH L+T   D  + HL ++   A  E++N+R++L  +K E
Sbjct: 548 LFLHYLVTRPDDMELLHLNKK--KADREMRNVRKRLRMIKCE 587


>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
            protein F20G4.3 protein.
          Length = 2003

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/87 (20%), Positives = 39/87 (44%)
 Frame = +2

Query: 62   LHSLITHKMDNNIDHLREQIIVARTEIKNLRQQLTALKHEHQKEINLIKAVFNDMRCSTC 241
            LHS +  K D    HL++Q+      +K+  + +  +K ++QK+I  +    + ++    
Sbjct: 1174 LHSQLKAKRDEEYAHLQKQL---EETVKSSEEVVEEMKAQNQKKIEELNETIDQLKRQKI 1230

Query: 242  GDTATLSNSDINREASTSVEDNFISYR 322
                  S+++ + E   +   N  S R
Sbjct: 1231 SADKAKSSAESDNENFRAELSNIASAR 1257


>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
            F20G4.3 protein.
          Length = 2003

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/87 (20%), Positives = 39/87 (44%)
 Frame = +2

Query: 62   LHSLITHKMDNNIDHLREQIIVARTEIKNLRQQLTALKHEHQKEINLIKAVFNDMRCSTC 241
            LHS +  K D    HL++Q+      +K+  + +  +K ++QK+I  +    + ++    
Sbjct: 1174 LHSQLKAKRDEEYAHLQKQL---EETVKSSEEVVEEMKAQNQKKIEELNETIDQLKRQKI 1230

Query: 242  GDTATLSNSDINREASTSVEDNFISYR 322
                  S+++ + E   +   N  S R
Sbjct: 1231 SADKAKSSAESDNENFRAELSNIASAR 1257


>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
            heavy chain II protein.
          Length = 2003

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/87 (20%), Positives = 39/87 (44%)
 Frame = +2

Query: 62   LHSLITHKMDNNIDHLREQIIVARTEIKNLRQQLTALKHEHQKEINLIKAVFNDMRCSTC 241
            LHS +  K D    HL++Q+      +K+  + +  +K ++QK+I  +    + ++    
Sbjct: 1174 LHSQLKAKRDEEYAHLQKQL---EETVKSSEEVVEEMKAQNQKKIEELNETIDQLKRQKI 1230

Query: 242  GDTATLSNSDINREASTSVEDNFISYR 322
                  S+++ + E   +   N  S R
Sbjct: 1231 SADKAKSSAESDNENFRAELSNIASAR 1257


>AL022271-1|CAA18349.1|  919|Caenorhabditis elegans Hypothetical
           protein F32F2.1 protein.
          Length = 919

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 80  HKMDNNIDHLREQIIVARTEIKNLRQQLTALKHEHQKEINLIKAV 214
           H+M + + HL++Q +VAR     L+++  AL H  Q    L+K V
Sbjct: 320 HRMMSTLYHLQQQPLVARA----LQERQLALNHSLQLSAYLLKPV 360


>AC006617-1|AAF39770.2|  397|Caenorhabditis elegans Hypothetical
           protein C39B5.6 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
 Frame = +2

Query: 83  KMDNNIDHLREQIIVARTEIKN---LRQQLTALKHEHQKEINLIK---AVFNDMRCSTC- 241
           ++D N+   ++ +   RTEIKN   +R   TA+ +E  ++  ++K   AV N+ R +   
Sbjct: 110 RVDANVSLAKDDVWGTRTEIKNMNSIRTIHTAINYEIARQFEILKNGGAVQNETRAADSE 169

Query: 242 GDTATLSNSD 271
           G T ++ + +
Sbjct: 170 GRTVSMRDKE 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,016,267
Number of Sequences: 27780
Number of extensions: 276697
Number of successful extensions: 761
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)