Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_H02
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 30 0.38
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 29 0.51
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 1.6
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 2.1
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.7
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 27 3.6
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 27 3.6
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 27 3.6
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 8.3
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 8.3
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 8.3
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|... 25 8.3
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 8.3
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 29.9 bits (64), Expect = 0.38
Identities = 23/89 (25%), Positives = 38/89 (42%)
Frame = -1
Query: 646 RSQEDLXNGISGNIGLNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGIKLAIV 467
R QED G N+ G E + E ++ L F G+ + +S + I+
Sbjct: 1109 RCQEDFERGWKANLPSGKAGEAEIMSDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIM 1168
Query: 466 KECD*FLNDNIIDFNADEMKFLLRIRLQV 380
EC L N+ D +E++ L R+ + V
Sbjct: 1169 HECIKRLLGNVTDPEEEEIESLCRLLMTV 1197
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 29.5 bits (63), Expect = 0.51
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +2
Query: 47 LDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEI 226
L IF+K +++ ++ FES K+ FH ++ W++ D EEV D+QR +
Sbjct: 247 LQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDF--EEVEGDFQRICHL 304
Query: 227 VARHVLGAA 253
R ++ A
Sbjct: 305 YERCLITCA 313
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 41 RFLDIFEKTFVQSLQKGKFESYG-KKID-FHDEKA 139
+FL+I+ +T + L G E G KK++ +HD KA
Sbjct: 606 QFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKA 640
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 2.1
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +3
Query: 60 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL-- 233
K+L + K + + + +T+ R+ L +T + +C K+ + I DL+ SL
Sbjct: 198 KQLDHFFSYKVTTVHKSYQRFATLLRRHLLDKTAKRYHDLCEKRPYKYITTDLLSPSLTC 257
Query: 234 -AMCSVQHLNHSTSTPSCPVRLTFT 305
A +Q + TS+ S PV L T
Sbjct: 258 FASDILQTVPEYTSSQSSPVLLPAT 282
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +2
Query: 512 KEIKTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVXKIFLGPKYNDNGFPITLEETG 691
+ I+ SYP+ F R P+ H P + +D + A + V L P+ N P+ +
Sbjct: 606 QHIQYSYPNTFVNRFPQNIHHPSANLLDASA--ALNPVQNPLLMPQQNHEHSPLVRSDAA 663
Query: 692 IN 697
++
Sbjct: 664 LH 665
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 320 DPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 469
+P F Q Y IVG I + K + + +P+ K + I + V+E VT+ D
Sbjct: 6 EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 394 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 257
I Q L+ + TH NPV EC +S+C L K G E L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 446 EKLVTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTID-VXSDIATDA 622
E++V + QF+A + T+K + + P K R+ RL F +D + D ATD
Sbjct: 591 ERVVLLEAWKQFEAMHGTEDTRKHVSSLMPQVVKKRR-RLEDGSFEEYLDYLFPDTATDQ 649
Query: 623 VXKI 634
K+
Sbjct: 650 GDKM 653
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 218 YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 322
Y +ARH L + FD HTF + FY T RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 601 LNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGI---KLAIVKEC 458
LN+ TE ++ ++ +V V S N FFG + G+ K ++ ++C
Sbjct: 309 LNITRKTETILKSLKESSTPLVQVVSFNAFFGVMIAILGVQFFKASLNRQC 359
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/78 (21%), Positives = 28/78 (35%)
Frame = +3
Query: 84 RKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNH 263
RK R+ ++ + + L + IC Q I L + C L H
Sbjct: 1063 RKIAHFESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKH 1122
Query: 264 STSTPSCPVRLTFTKPHF 317
S+S P C +L ++
Sbjct: 1123 SSSCPMCKTKLNKNNAYY 1140
>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 723 LCVNQSVRRFMPVSSNVMGNPLSLYL 646
+ ++ + RRF+PV+ MGN + Y+
Sbjct: 264 MLIDVNARRFLPVAKQTMGNYVFSYV 289
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 620 AVXKIFLGPKYNDNGFPIT 676
A+ K+ L KYN N FP T
Sbjct: 663 AISKVSLNMKYNSNYFPTT 681
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,191
Number of Sequences: 5004
Number of extensions: 61276
Number of successful extensions: 213
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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