Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H02
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     28   1.2  
01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502...    29   3.7  
05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     29   4.9  
01_02_0091 - 11023912-11024017,11024112-11024185,11024478-110248...    29   4.9  
11_01_0460 + 3561490-3564104,3564162-3564558                           28   8.6  

>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 27.9 bits (59), Expect(2) = 1.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 625 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 524
           NG +     +  G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257



 Score = 21.4 bits (43), Expect(2) = 1.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 493 VSGIKLAIVKECD*FLNDNIIDFNADEMKFL 401
           VSG ++A+  +    L+ N++  + DEM  L
Sbjct: 298 VSGTRIALGDDGSIALSRNVVVLHVDEMLLL 328


>01_05_0548 +
           23149271-23149568,23149766-23149845,23150137-23150223,
           23150421-23150729,23150774-23150899,23151977-23152360,
           23152603-23152608
          Length = 429

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +2

Query: 452 LVTFFDYSQFDATNSVFLTK-----KEIKTSYPHNFKVRQPRLNHKPFSVTIDVXSDIAT 616
           L   F +S F ++++  + +      ++KT    ++ ++ PRL +   S+  DV + +  
Sbjct: 64  LAAVFSFSSFTSSSNYVIRECLGSVLDLKTVATIDWSMKTPRLQYYTSSMVDDVFTRLGE 123

Query: 617 DAVXKIFLGPKYNDNGFP 670
           D   K +    Y  NG P
Sbjct: 124 DIKVKPWAHTVYGKNGIP 141


>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 99  NRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLS 230
           NR+ R L++  +++    E I +    CMKK+   ++N L  +S
Sbjct: 39  NRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82


>01_02_0091 -
           11023912-11024017,11024112-11024185,11024478-11024834,
           11024938-11025166,11025468-11025559,11026099-11026326,
           11027108-11027356,11027429-11027471,11027589-11027836,
           11027922-11028035,11028122-11028322,11028417-11028593,
           11028725-11028853,11029210-11029287,11029369-11029464,
           11029563-11029634,11031549-11031677,11032105-11032220,
           11033048-11033204,11033343-11033426,11033513-11033574,
           11034901-11035067,11035162-11035226,11035315-11035371,
           11035547-11035633,11036638-11036703,11036810-11036908
          Length = 1193

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 593 DVXSDIATDAVXKIFLGPKYNDNGFPITLEETGINLR 703
           D+  +  T++    F GP Y+D G+ +   + G +L+
Sbjct: 802 DIAMETKTNSEGSFFAGPLYDDIGYTVEASKAGYHLK 838


>11_01_0460 + 3561490-3564104,3564162-3564558
          Length = 1003

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
 Frame = -2

Query: 714 NQSVRRFMPVSSNVMGNPLSLYLGPKKILXTASVA-------ISDXTSMVTLKGLWLSR 559
           N +  +F+ +S+N     + L LG    L T  ++       I D T+   LK LWLSR
Sbjct: 75  NMTFLKFLSLSTNSFTGEIHLSLGHLHRLETLDLSNNTLQGDIPDFTNCSNLKSLWLSR 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,073,302
Number of Sequences: 37544
Number of extensions: 357558
Number of successful extensions: 888
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)