Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_H02
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical pr... 31 1.1
AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell death-re... 31 1.1
AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical... 30 1.9
AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical... 30 1.9
AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical... 30 1.9
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 29 3.4
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 29 3.4
AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear recep... 29 3.4
AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear horm... 29 3.4
U58757-2|AAC47915.2| 402|Caenorhabditis elegans Hypothetical pr... 29 4.4
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 28 5.9
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 28 5.9
U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astaci... 28 7.8
>Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical
protein C14A4.4a protein.
Length = 876
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Frame = +2
Query: 353 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 520
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 521 KTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVXKIFLGPKYNDNGFPITLE-ETGIN 697
+++ + + +L + +V S+ ++D K++ P +N G+ ++ +N
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGYLTEIKFRFTLN 489
Query: 698 LRTDW-FTH 721
R D+ TH
Sbjct: 490 TRQDYALTH 498
>AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell
death-related nuclease 3 protein.
Length = 876
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Frame = +2
Query: 353 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 520
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 521 KTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVXKIFLGPKYNDNGFPITLE-ETGIN 697
+++ + + +L + +V S+ ++D K++ P +N G+ ++ +N
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGYLTEIKFRFTLN 489
Query: 698 LRTDW-FTH 721
R D+ TH
Sbjct: 490 TRQDYALTH 498
>AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7c protein.
Length = 187
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 183 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 332
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 104 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 150
>AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7b protein.
Length = 214
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 183 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 332
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 131 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 177
>AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7a protein.
Length = 271
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 183 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 332
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 177 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 223
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 189 KKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYIT 347
K+ Q+ ++L K++ H + STS+ P +TF+ P FE + S +T
Sbjct: 325 KENQQKYSELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFEQKINSSTMT 377
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -1
Query: 559 WLTNLEVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNIIDFNADEM 410
W+TNL + NL+F +Y + G L ++ + + +++ F EM
Sbjct: 142 WITNLHYAFQDEKNLYFVMDYYIGGDMLTLLSKFVDHIPESMAKFYIAEM 191
>AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear receptor
NHR-92 protein.
Length = 362
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 128 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 42
RG+++ C + CL V T+R +KC T
Sbjct: 43 RGHEYRCKQMENCLIVSTIRNMCKKCRYT 71
>AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 92 protein.
Length = 354
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 128 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 42
RG+++ C + CL V T+R +KC T
Sbjct: 35 RGHEYRCKQMENCLIVSTIRNMCKKCRYT 63
>U58757-2|AAC47915.2| 402|Caenorhabditis elegans Hypothetical
protein C01B10.3 protein.
Length = 402
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +2
Query: 8 NLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYE 187
NL+ KN+ I++ D F T +++ G S G + D N G + D Y
Sbjct: 93 NLYLFKNHSDIQYYDRFSSTGYINVRSGHQHSIGS--NECDGFIQNTFGQNYTFRRDFYN 150
Query: 188 EEVTKDY--QRSYEIVAR 235
++ T+D QR+ ++AR
Sbjct: 151 DDGTRDLANQRTGFLLAR 168
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 258 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 383
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 258 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 383
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astacin
protease protein38 protein.
Length = 745
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 125 HDEKAINFVGNYWQENADLYEEEV 196
HDE A+N Y+Q + DL E++V
Sbjct: 75 HDELAVNNADEYFQGDVDLSEQQV 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,168,357
Number of Sequences: 27780
Number of extensions: 338892
Number of successful extensions: 1019
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -