Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_H01
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93382-2|CAB07612.2|  639|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z93382-2|CAB07612.2|  639|Caenorhabditis elegans Hypothetical
           protein F45G2.3 protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 383 EQRIPPPLVQTGCCTSDLAPRTHLLKYPGLKH 288
           E+  PPP+++    T D A +TH  + P L H
Sbjct: 517 EELKPPPILRKAVSTPDSARKTHKFQSPLLNH 548


>AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical
           protein Y40D12A.1a protein.
          Length = 635

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 410 ATLVDPDYWDLDVFEPTIADYDQFDLTLTKRISSYSDKNF*LSPLGLK 553
           A + DPDY  LDV +      DQ ++  T  I   +  +  + P+ LK
Sbjct: 417 ADIFDPDYQKLDVEQIVARIMDQEEILTTSDIQLRTIDSLFVDPIALK 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,620,735
Number of Sequences: 27780
Number of extensions: 215405
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)