Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_G24
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   5.0  
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac...    25   5.0  
SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   6.6  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   8.7  

>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 330 VSRKKYLSVIKKNLLIFEFLILVGMGVDGGRREGCGVSGRY 452
           +S+  YL  I + LL F+F  +  + +       C V GRY
Sbjct: 55  ISQNLYLDTINRKLLDFDFEKVCSVSLTNLSVYACLVCGRY 95


>SPAC6F12.04 |||COPI-coated vesicle associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 366 NLLIFEFLILVGMGVDGGRREGCGVSGRYKSFRF*F 473
           N L+  F+I+ G+G  G  +E   ++ +Y SF F F
Sbjct: 33  NALLALFIIVFGLGTIGLEKEIPPIAIKYGSFMFSF 68


>SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 100

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 262 TN*LLFSKLLYCKNL 306
           TN +LFS+L+ CKNL
Sbjct: 5   TNEVLFSRLVVCKNL 19


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 192 KETAKILNVVLGRLRVHIRSGRGHKLTIVFKTTIL*KSYVYPYVLN 329
           KE + +  V +G  ++ +   +  KL+  F+ + + +  +YP +LN
Sbjct: 52  KENSNLTCVNIGYWQLFLNIWKSDKLSGSFRVSAIRRQSLYPIILN 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,891
Number of Sequences: 5004
Number of extensions: 37170
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)