Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_G24
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854...    28   3.8  
03_06_0354 - 33333634-33333840,33334106-33334213,33335384-333355...    27   6.6  
08_02_0555 + 18574934-18575271,18575726-18576095,18576864-18576959     27   8.8  
06_03_0532 - 21844213-21844252,21844579-21844836,21845303-218455...    27   8.8  

>02_05_0070 -
           25584690-25584806,25585151-25585312,25585396-25585491,
           25585894-25585955,25586035-25586110,25586195-25586277,
           25586456-25586778,25586882-25586928,25587014-25587150,
           25587250-25587322,25588159-25588251,25588543-25588632,
           25588684-25588786,25588869-25588981,25589181-25589778,
           25589888-25590065,25590277-25590296,25590713-25590882,
           25591245-25591485,25592997-25593199
          Length = 994

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 286 VLKTIVSLCPRPLRM*TRSLPNTTFRIFAVSLYITNIYIKQILQYSCLSFKH 131
           +  ++VS C R L + T +L       +  S   +N Y K+ L+Y C    H
Sbjct: 58  IANSVVSRCSRVLALATETLQQNFEVDYPDSCKESNTYAKEFLEYCCHKALH 109


>03_06_0354 -
           33333634-33333840,33334106-33334213,33335384-33335557,
           33335637-33335765,33335858-33336145,33336257-33336489,
           33336607-33337435
          Length = 655

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 415 GEGERAVECPDVIKVSGSSFKSKYRTIE 498
           GE ER+  CP  I ++G  F+ K RT+E
Sbjct: 145 GEEERS-RCPHSIVLTGDEFRVKGRTVE 171


>08_02_0555 + 18574934-18575271,18575726-18576095,18576864-18576959
          Length = 267

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 399 GMGVDGGRREGCGVSGR 449
           G+G DGG+  G GVSGR
Sbjct: 46  GLGGDGGQSSGGGVSGR 62


>06_03_0532 -
          21844213-21844252,21844579-21844836,21845303-21845568,
          21845963-21846369,21846528-21847143
          Length = 528

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 17 PRAVATSFLVITGLLL*LPYL 79
          PRA  T+FL++T  L  +PYL
Sbjct: 3  PRAQLTTFLIVTSFLSTVPYL 23


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,797,750
Number of Sequences: 37544
Number of extensions: 196582
Number of successful extensions: 439
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)