Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_G24
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine re...    29   2.0  
AC006607-4|AAK68171.1|  309|Caenorhabditis elegans Serpentine re...    28   4.5  
Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z68316-7|CAM35840.1|  310|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein142 protein.
          Length = 361

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -1

Query: 298 YNIVVLKTIVSLCPRPLRM*TRSLPNTTF-RIFAVSLYITNIYIKQILQYSCLSFKH*QQ 122
           ++I +++T+V   P        + P T+F  I  VSL    I I   L+Y   S K+   
Sbjct: 133 FSIALIRTLVIRNPMKTEYEKLTKPPTSFLAIIVVSLVFCPISISTFLEYDIFSEKYKST 192

Query: 121 -NEEIRLEYFLY 89
            N +  L Y+LY
Sbjct: 193 CNPKGVLSYYLY 204


>AC006607-4|AAK68171.1|  309|Caenorhabditis elegans Serpentine
           receptor, class xa protein5 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 153 YCNICFI*MFVMYKETAKILNVVLGRLRVHIRSGRGHKLTIV 278
           +C +C I   V + E      +++G+++       G K+T+V
Sbjct: 262 FCIVCSINFLVYFVEARSTRELLIGKIKSRFSVSNGSKITVV 303


>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical
           protein R102.6 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
 Frame = +3

Query: 276 VFKTTIL*KSYVYPYVLNVSRKKYLSVIKKNL----LIFEFLILVG---MGVDGGRREGC 434
           V+  +++ +++VY    N+ R+    V KKN+    L+F F I V     G  GG   GC
Sbjct: 169 VYMLSVVWRAFVYICDFNMQRQIEKIVQKKNMNLIFLLFTFPIFVDNFLFGFGGGGGCGC 228

Query: 435 GVS 443
           G S
Sbjct: 229 GSS 231


>Z68316-7|CAM35840.1|  310|Caenorhabditis elegans Hypothetical
           protein K08E4.8 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +1

Query: 139 MTDRNIVIFVLYKCLLCIKRLQKF*TWYWVDYGFTSGAVADTN*LLFSKLLYC 297
           +TD+++ IF+ +    C +RL+    W+ V   + S  V D N +LF  + YC
Sbjct: 209 LTDKDVNIFLKHWICGCNRRLEYVHLWFKVSDIYQSDDV-DLN-ILFKNVDYC 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,793,900
Number of Sequences: 27780
Number of extensions: 202752
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)