Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_G20
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 286 2e-78
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 217 7e-58
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 123 2e-29
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 101 6e-23
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 48 1e-06
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 47 2e-06
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 42 9e-05
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 40 3e-04
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 38 8e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 38 0.001
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 38 0.001
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 37 0.002
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 37 0.002
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 36 0.004
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 35 0.010
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 34 0.013
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 33 0.023
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 33 0.040
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 31 0.12
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 30 0.21
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 30 0.21
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.5
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 27 1.5
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 27 2.6
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 27 2.6
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 3.5
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 3.5
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 3.5
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 26 4.6
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 26 4.6
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 4.6
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 25 8.1
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 25 8.1
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 8.1
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 8.1
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 286 bits (701), Expect = 2e-78
Identities = 134/153 (87%), Positives = 143/153 (93%)
Frame = +2
Query: 122 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 301
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 302 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVHSNDRERIGEAREELMRMLSEDELRDAV 481
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVV SNDRERI EA EEL RML+EDELRDA+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDAL 120
Query: 482 LLIFANKQDLPNAMNAAEITDKLGLHSLRNRNW 580
LL+FANKQDLPNAMNAAEITDKLGLHSLR+R W
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRQW 153
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 217 bits (531), Expect = 7e-58
Identities = 102/149 (68%), Positives = 119/149 (79%)
Frame = +2
Query: 134 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 313
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFN 68
Query: 314 VWDVGGQDKIRPLWRHYFQNTQGLIFVVHSNDRERIGEAREELMRMLSEDELRDAVLLIF 493
VWDVGGQDKIRPLWRHYF T+GLIFVV S D RI EAR+EL R++S+ E+RD +LL+
Sbjct: 69 VWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVL 128
Query: 494 ANKQDLPNAMNAAEITDKLGLHSLRNRNW 580
ANKQDLP A++ A+ITD L L L++R W
Sbjct: 129 ANKQDLPGALSPAQITDVLQLDKLKDRLW 157
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 123 bits (297), Expect = 2e-29
Identities = 57/140 (40%), Positives = 93/140 (66%), Gaps = 1/140 (0%)
Frame = +2
Query: 164 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDK 340
++E+R+L++GLD AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 341 IRPLWRHYFQNTQGLIFVVHSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNA 520
+R W++YF++T+ +I+VV S D R+ E R L +L E++L +L+ ANK D+ A
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGA 132
Query: 521 MNAAEITDKLGLHSLRNRNW 580
+++ EI+ L + ++ +W
Sbjct: 133 LSSEEISKILNISKYKSSHW 152
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 101 bits (243), Expect = 6e-23
Identities = 50/131 (38%), Positives = 76/131 (58%)
Frame = +2
Query: 167 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 346
K ++L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 347 PLWRHYFQNTQGLIFVVHSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMN 526
LWR YF G++++V D ER+ E++ EL +L+ +EL LI NK D P A++
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAIS 138
Query: 527 AAEITDKLGLH 559
E+ LGL+
Sbjct: 139 EDELKAALGLY 149
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 48.0 bits (109), Expect = 1e-06
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Frame = +2
Query: 176 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 340
++L++G GK+ +L + + I TIG F + T E K + +WD GQ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 341 IRPLWRHYFQNTQGLIFVVHSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 511
R + Y++ G+I V D++ ++ L + + L+ NK D+
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 46.8 bits (106), Expect = 2e-06
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +2
Query: 173 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 337
+++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 338 KIRPLWRHYFQNTQGLIFVVHSNDRERIGEAR 433
+ R + Y++ G++ + D++ R
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 41.5 bits (93), Expect = 9e-05
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Frame = +2
Query: 176 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 340
+ +++G GK+ +L + E + + TIG T ++ K I +WD GQ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 341 IRPLWRHYFQNTQGLIFVVHSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 511
R + Y++ G + +V+ ++ + ++ L E + V+++ NK DL
Sbjct: 72 YRAITSAYYRGAVGAL-IVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDL 127
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 39.9 bits (89), Expect = 3e-04
Identities = 25/123 (20%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Frame = +2
Query: 158 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWD 322
F ++ +++ +G + GKT+++ + + T TIG + + +E + + +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 323 VGGQDKIRPLWRHYFQNTQGLIFVVHSNDRERIGEAREELMRMLSEDELRDAVLLIFANK 502
GQ++ R L Y +++ I V + E+ + + + D ++++ NK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDDVIIVLVGNK 125
Query: 503 QDL 511
DL
Sbjct: 126 TDL 128
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 38.3 bits (85), Expect = 8e-04
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 263 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVHSNDRER--IGEARE 436
T+G + + ++ ++DVGGQ R W + F+N +IF V ND ++ A
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 437 ELMRMLSEDELRDAVL 484
E R++ L D+++
Sbjct: 239 ERNRLVESISLFDSII 254
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +2
Query: 176 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDK 340
++++VG GKTT + + GE I T+G V + + I F VWD GQ+K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 341 IRPLW-RHYFQNTQGLI 388
+ L +Y Q G+I
Sbjct: 71 LGGLRDGYYIQGQCGII 87
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +2
Query: 290 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVHSNDRERIGEAREELMRMLSEDEL 469
+ K I +WD GQ+K R + R+Y++ G + V +++ E L + +
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPS 117
Query: 470 RDAVLLIFANKQDLPN 517
V+L +K DL N
Sbjct: 118 TICVVLA-GSKSDLQN 132
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 257 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 397
I T G + ET + +DVGGQ R W H F+N L+F+V
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLV 265
Score = 26.6 bits (56), Expect = 2.6
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +2
Query: 161 GKKEMRILMVGLDAAGKTTILYKLKL 238
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 37.1 bits (82), Expect = 0.002
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Frame = +2
Query: 176 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV---EYKNISFTVWDVGGQD 337
+++++G A GK++++ + + TIG F +T+ E ++ +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 338 KIRPLWRHYFQNTQGLIFVVHSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPN 517
+ + L Y++N I VV+ + E + ++ L V+ + NK DL
Sbjct: 76 RYKSLAPMYYRNANCAI-VVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQ 134
Query: 518 AMNAAEITD 544
A E D
Sbjct: 135 ERRAVEKAD 143
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 35.9 bits (79), Expect = 0.004
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Frame = +2
Query: 176 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQ--- 334
++++VG A GKT++L LG T +PT+ N + V+ K++ +WD GQ
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 335 DKIRPL 352
+++RP+
Sbjct: 70 ERLRPM 75
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 34.7 bits (76), Expect = 0.010
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Frame = +2
Query: 161 GKKE--MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVW 319
GKK+ ++++++G GKT+I+ + + TIG + T V+ K ++ +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 320 DVGGQDKIRPLWRHYFQNTQGLIFVVHSNDR---ERIGEAREELMRMLSEDELRDAVLLI 490
D GQ++ + L +++ + V N+ E + R+E + S ++
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFIL 122
Query: 491 FANKQDL 511
NK D+
Sbjct: 123 LGNKVDV 129
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 34.3 bits (75), Expect = 0.013
Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Frame = +2
Query: 173 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQD 337
+++ M+G + GKT+++ G + T+G N +T+ +N I+F++WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 338 KIRPLWRHYFQNTQGLIFVVHSNDRERIGEARE 436
+ + + ++F+ + + + +E
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.023
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Frame = +2
Query: 176 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ--- 334
++++VG A GKT +L G +PT+ N V VE ++I +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 335 DKIRPL 352
D++RPL
Sbjct: 68 DRLRPL 73
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 32.7 bits (71), Expect = 0.040
Identities = 22/106 (20%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Frame = +2
Query: 173 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 337
++++++G GKT ++ + + TIG + T V+ K ++ +WD GQ+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 338 KIRPLWRHYFQNTQGLIFVVHSNDR---ERIGEAREELMRMLSEDE 466
+ + L +++ + V + N+ + + R+E + S+DE
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDE 114
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 31.1 bits (67), Expect = 0.12
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Frame = +2
Query: 176 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF------TVWDVGGQD 337
++L++G +GK+++ + + +G ++ +E+ ++ F +WD GGQ+
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATID-IEHSHVRFLGNLVLNLWDCGGQE 62
Query: 338 KIRPLW-----RHYFQNTQGLIFVVHSNDRE 415
+ H F+N Q LI+V RE
Sbjct: 63 AFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 30.3 bits (65), Expect = 0.21
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Frame = +2
Query: 164 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 343
KK + ++G +GKT++ +L E TT+P+I N E V +K ++ V D+ G +
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAV-WKYGAWLV-DLPGHPRA 91
Query: 344 RPLWRHYFQ---NTQGLIFVVHSNDRER-IGEAREELMRMLSEDELRDAV-LLIFANKQD 508
+ F N + ++FV++S +R + E L + + LLI NK D
Sbjct: 92 KRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCRKHHVPHLLIACNKFD 151
Query: 509 LPNAMNAAEITD--KLGLHSL 565
L A A +I K LH++
Sbjct: 152 LFTAQPAEKIQQLLKAELHNI 172
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 30.3 bits (65), Expect = 0.21
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +2
Query: 176 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQDKI 343
+I+++G AAGKT++L G PTI N V+ +I ++WD GQ++
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 344 RPLWRHYFQNTQGLI--FVVHSND 409
L + +T ++ F V S D
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRD 98
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 358 PPQWSDFVLTAYIPHSETNVFVFY 287
PP+ SDF++ ++ H + N F F+
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFH 280
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 158 FGKKEMRILMVG-LDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 322
F K+ RIL VG L + + K GE+ +P +GF ++++ +N FT+++
Sbjct: 237 FLKEAYRILKVGGLLWVAEIKSRFSDKSGEVFAKELPKLGFETKSIQLQNKMFTLFE 293
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 26.6 bits (56), Expect = 2.6
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = -1
Query: 288 TVSTLNPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKFANIFPIF 118
T T+ P V + ++S N +L VVL + + +IN+ L ++ FA +FPIF
Sbjct: 191 TTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-LFPIF 244
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 44 IEFSECSFFLILKTFASEKYYS--QSIKMGNMFANLFKGLFGKKEMRIL 184
I F +C +S+K++S SIK F +F G+F KK L
Sbjct: 197 IRFRQCLIERSSADNSSDKFWSTLNSIKYFTAFPAIFLGIFAKKRFSFL 245
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 179 ILMVGLDAAGKTTILYKLKL 238
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 167 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 268
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 143 LFKGLFGKKEMRILMVGLDAAGKTTI 220
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 4.6
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +2
Query: 38 NFIEFSECSFFLILKTFASEKYYSQSIKMGNMFANLFKGLFGKKEMRILMVG--LDAAGK 211
N + F + ++L T E + S GN+FA L + ++ L G L+
Sbjct: 429 NDVVFGVSTNDILLHTSREELFRLPS--HGNLFARLVSHVLHQRHFYPLFPGGSLEKCNP 486
Query: 212 TTI-LYKLKLGEIVTTIPTI 268
+ + + LKLGE + T+P I
Sbjct: 487 SNLDIAHLKLGEFLNTMPDI 506
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 373 ILEIMPPQWSDFVLTAYIPHSETNVFVFYSLHIEPNS 263
+LEIM + S +++ Y+ H T V + LH P +
Sbjct: 339 LLEIMVEKSSVYMVFEYMDHDLTGVLLNSQLHFTPGN 375
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 407 DRERIGEAREELMRMLSEDELRDAVL----LIFANKQDLPNAMNAAEITDKLGLHSLRNR 574
D E+ + REE +R+L E +DA + + +DL + ++ A+++ K +S
Sbjct: 405 DEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATE 464
Query: 575 N 577
N
Sbjct: 465 N 465
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/57 (22%), Positives = 31/57 (54%)
Frame = +2
Query: 68 FLILKTFASEKYYSQSIKMGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKL 238
F +L+T+ + + ++KM + N+ L G + ++G +AAG + + ++ +L
Sbjct: 841 FFLLRTY--HRQLTTTVKMRPLLNNIRSSLRGSLQEERSLIGYNAAGLSYLRHEWEL 895
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 164 KKEMRILMVGLDAAGKTTILYKL 232
KK I++VG+ +GKTT + +L
Sbjct: 6 KKPCAIIVVGMAGSGKTTFMQQL 28
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 164 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 271
KK++ + ++G AGK++I+ L+ ++ P G
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPG 343
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 245 IVTTIPTIGFNVETVEYKNISFTVW 319
I T P F+++ EY N+ VW
Sbjct: 237 IYFTFPVNSFSIDGCEYNNVKALVW 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,165
Number of Sequences: 5004
Number of extensions: 51973
Number of successful extensions: 198
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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