Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_G19
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 36 0.002
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 32 0.037
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 30 0.20
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 29 0.35
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 29 0.46
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 28 0.61
SPAC664.08c |||traub transciption factor family protein |Schizos... 28 0.61
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 28 0.81
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 28 0.81
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 1.9
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 27 1.9
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 27 1.9
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 2.5
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom... 26 2.5
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 26 2.5
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 3.3
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.3
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 5.7
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 25 5.7
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 5.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 5.7
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 7.5
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 7.5
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 7.5
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 25 7.5
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 25 7.5
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc... 24 9.9
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 24 9.9
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 24 9.9
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 24 9.9
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 24 9.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 24 9.9
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 24 9.9
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 36.3 bits (80), Expect = 0.002
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +1
Query: 307 RREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYI 465
+R +H + E++RR+AI +G L +VP C++ +K ++LQ++ YI
Sbjct: 89 KRLSHKEVERRRREAISEGIKELANIVPGCEK--------NKGSILQRTAQYI 133
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 32.3 bits (70), Expect = 0.037
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +2
Query: 191 VAVGLYKTS--IKLRRLLIKIQKTKMTVEIIRHRHLVLKKGEEKLTPKQ 331
+ +G+ KT I +RR IK+ T ++ RHR VL+KG EK+ P+Q
Sbjct: 735 ILIGITKTEQDITIRRETIKLIGTLGALDPNRHR--VLEKGTEKVVPEQ 781
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 29.9 bits (64), Expect = 0.20
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +1
Query: 163 DICNMYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR 342
+I ++ GS S++ S+++ DED+ DNK ++R+ + ++ +KR
Sbjct: 222 EISDLEDWLGSDQSMETSESEEEESSESESDEDEDEDNKG---KIRKRKTDDAKKSRKKR 278
Query: 343 RDAIKKGYDSLQE 381
I Y+ +E
Sbjct: 279 APHIHIEYEQERE 291
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 29.1 bits (62), Expect = 0.35
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 193 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRD 348
S+G+ + QTP+S +N EDE+ K RR Q ++K+ D
Sbjct: 44 STGTESEVIQTPTSVEENNEDENSMSTTTIEIPVVK--RRNLRNQKKKKKTD 93
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 28.7 bits (61), Expect = 0.46
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 229 SSSNQNTEDEDDSGDNKASALSFKERR--REAHTQAEQKRRDAIKKGYDSLQELV 387
+S N + + DDSGD S L+ ++ + + QA QK R KK +LQ+ V
Sbjct: 99 ASHNSPSRELDDSGDENTSKLTGTKQSMLKARNRQAAQKCRIKKKKYLQTLQDQV 153
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 28.3 bits (60), Expect = 0.61
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 226 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVP 390
PS+ + +D DD N S+ S K + + TQA + + D + G + ++ +P
Sbjct: 87 PSTDKKKKKDNDDFKQNLKSS-SNKTEEKYSATQASKSKNDEFELGGEENEDEMP 140
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 28.3 bits (60), Expect = 0.61
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 193 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAI-KKGYD 369
+SGS+ + +PS + EDE+D+ S E + + + AI +K D
Sbjct: 81 NSGSLNSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSISEENEDDDQSSAIPEKDMD 140
Query: 370 SLQELV 387
L++++
Sbjct: 141 RLKKII 146
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.9 bits (59), Expect = 0.81
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 217 HQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQ---KRRDAIKKGYDSLQ 378
+ P N +T DED S + S+ REA++ A + +RR +DSL+
Sbjct: 974 YSNPDDKNTSTSDEDTSESEEESSNGLFSLAREANSHASKSLPQRRQIQFLDFDSLK 1030
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 27.9 bits (59), Expect = 0.81
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 208 QNIHQTPSSSNQNTEDEDDSGD--NKASALSFKERRREAHTQ 327
Q + + ++++ D DDS D NK S +S K R+ E+++Q
Sbjct: 105 QELLRQTLEADEDASDSDDSVDSSNKNSEVSIKRRKTESNSQ 146
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/79 (20%), Positives = 37/79 (46%)
Frame = +1
Query: 157 ITDICNMYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQ 336
+T+I + + G I+ ++ S + ++ +K + +SFK+++ E +Q+ Q
Sbjct: 916 VTEIKTLQDKIMEIGGIR--YRIQKSKVDDLHEQLKFVKDKLNKMSFKKKKNEQRSQSFQ 973
Query: 337 KRRDAIKKGYDSLQELVPT 393
+ YD+ E + T
Sbjct: 974 VELSNLTSEYDTTTESIAT 992
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 360 FLNGISSFLFCLGVSFSSPFFKTKCRCLIISTVIFVFCI 244
FL+ F C G+ + F T C+ I+S I FC+
Sbjct: 9 FLHLSKEFYDCCGLFLLTFFLLTTCQLRILSLSINAFCV 47
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 255 VFCILIRRRRSLMDVLYRPTATTPRVHVAYISD 157
VF R + D Y P TTP +H+A SD
Sbjct: 144 VFVGGFRAEKPEFDHFYNPKLTTPSLHIAGTSD 176
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 217 HQTPSSSNQNTEDEDDSGDNKASALS 294
+ TP S + ED+D +G NK +A S
Sbjct: 365 NNTPMSEKRKREDDDANGPNKFAARS 390
>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 295 FKERRREAHTQAEQKRRDAIKKGYDSLQELV 387
+KE R HT + ++A++K D L +LV
Sbjct: 4 YKELARRLHTLQSKNEKEALEKQIDFLDKLV 34
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 190 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRD 348
G SG + + S+ ++++ D+ D+ LS ERR + +QK++D
Sbjct: 378 GYSGYVAGLSSRDPDSDFDSDNVDEYIDDHKRGLSSTERRDLDRVRDKQKKQD 430
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 3.3
Identities = 15/86 (17%), Positives = 36/86 (41%)
Frame = +2
Query: 95 LFVNGTYFNTIDKILRFQLYKSLIYATCTLGVVAVGLYKTSIKLRRLLIKIQKTKMTVEI 274
L VN + + + LY+ ++ LG+ L+ S + + + T+E+
Sbjct: 133 LEVNSSVSLENTNVCKASLYRFMLMCKNELGLTDAALFSISEIYKPSTAPLVRALQTIEL 192
Query: 275 IRHRHLVLKKGEEKLTPKQNRNEEMP 352
+ ++ V + TP + ++ +P
Sbjct: 193 LLKKYEVSNTTKSSSTPSPSTDDNVP 218
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 3.3
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +1
Query: 181 SRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKK 360
+R SS I + TPSSS+ ++ S +K+S+ S + +++ + K
Sbjct: 139 TRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKS 198
Query: 361 GYDS 372
S
Sbjct: 199 SSSS 202
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 5.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 209 KTSIKLRRLLIKIQKTKMTVEIIRHRHLVLKKGEEKLTPKQN 334
KT ++ RL +++KTK E+ H++ ++T KQN
Sbjct: 755 KTVLEQHRLS-EMRKTKKQTELTNSAHVIKPSPTPQITVKQN 795
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.0 bits (52), Expect = 5.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 224 LRRLLIKIQKTKMTVEI 274
+R LLI++QKTK+ VE+
Sbjct: 419 VRTLLIQLQKTKVDVEV 435
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 5.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +1
Query: 238 NQNTEDEDDSGDNKASALSFKERRRE----AHTQAEQKRRDAIKKG 363
N E+E++ G+ K A + KER + + Q+RR+ KG
Sbjct: 294 NGGEEEEEEEGEEKEDAQNIKERMVDFCFSKFMEKNQQRREQQDKG 339
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 5.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +1
Query: 238 NQNTEDEDDSGDNKASALSFKERRRE----AHTQAEQKRRDAIKKG 363
N E+E++ G+ K A + KER + + Q+RR+ KG
Sbjct: 294 NGGEEEEEEEGEEKEDAQNIKERMVDFCFSKFMEKNQQRREQQDKG 339
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 320 TPKQNRNEEMPLRKDMIHFKSWFLPVNKLMHQAISTVK 433
+P+Q +PLRKD + F L + + I+T++
Sbjct: 251 SPEQTSTVTLPLRKDTVLFSLVTLDLEQRASAVITTIQ 288
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 24.6 bits (51), Expect = 7.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 244 NTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASG 417
N ++ D+S K L KER E E++RRD +K +D+ + + ++ SG
Sbjct: 303 NAKELDESRRKKIELLEKKERDEEQF--LEKERRDTARK-WDNQGDFIRNMRKEIYSG 357
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 223 TPSSSNQNTEDEDDSGDNKASALSFKE 303
+P SN++ +DD D AS + KE
Sbjct: 230 SPEESNESEFIDDDESDEVASIIDIKE 256
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 24.6 bits (51), Expect = 7.5
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 3 EVDTY-YYNDIILFFITYLGKMGYAKKNLLIFFL*MERTLIQ*IRFYVFNF 152
E+D Y Y+++ ++++ Y +MGYA + +L E + F FN+
Sbjct: 489 EIDEYGYFHNSFVYYL-YAAQMGYALAEINAAYLMDENKFLINSVFRYFNY 538
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 24.6 bits (51), Expect = 7.5
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Frame = +1
Query: 211 NIHQTPSSSNQNTEDEDDSGDNKASALS----FKERRREAHTQAEQKRRDAIKKGYDSLQ 378
+I S ++ E S NK S ++RR E EQK+ + + + D
Sbjct: 249 SIDSDDQSEHEQAETPIPSSKNKRKTRSQRNKIRQRREEELRLLEQKKNEELLRTIDKAP 308
Query: 379 ELVPTCQQTDASGYKHSKA 435
+ QQ D + +KA
Sbjct: 309 AISKKLQQKDKAEKFSNKA 327
>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 24.2 bits (50), Expect = 9.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 86 VNILFVNGTYFNTIDKILRFQLYKSLIYATCTLGVVAVGLYK 211
VN+ F N N ++ Q+ KS IYA VA+GL K
Sbjct: 123 VNVAF-NSANANKSTQLTLPQMTKSYIYAVSASCGVAIGLNK 163
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.2 bits (50), Expect = 9.9
Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +2
Query: 74 EEKLVNILFVNGTYFNTIDKILRFQLYKSLIYATCTLGVV----AVGLYKTSIKLRRLLI 241
E+K + I +N + + +LR + +L+Y T ++ +G +T K+ +LL
Sbjct: 1672 EDKSLRITLLNVGFMKQLPNLLRQETASALLYITLLFRLLKTRDPLGKTETDQKIHKLLF 1731
Query: 242 KI--QKTKMTVEIIRHRH 289
+ + M ++ +H
Sbjct: 1732 PVCAEMLDMYASLVVEKH 1749
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 205 IQNIHQTPSSSNQNTEDEDDSGDN 276
+ + + T SS N ++ EDDSG++
Sbjct: 61 LTSTNNTRSSDNTTSDTEDDSGED 84
>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1150
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 283 SALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPT 393
S +S ER HT + +++R I++ +L VP+
Sbjct: 1074 SQMSLDERNTPKHTASTKRKRQPIRRVTTNLTSDVPS 1110
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 24.2 bits (50), Expect = 9.9
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 229 SSSNQNTEDEDDSG-DNKASALSFKERRR 312
SS N EDE S D A +S K +RR
Sbjct: 48 SSKNSYQEDEGSSSIDENAPLISIKRKRR 76
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.2 bits (50), Expect = 9.9
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 229 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTC 396
SSS + + +D+ K SALSFK+ + + A+ + ++K+ + + L+ C
Sbjct: 1028 SSSKELAKQLEDAVREKDSALSFKKDYEKIRSDAD-RVITSLKEDIEKERSLMKEC 1082
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 123 VLKYVPFTKRILTSFSSRNPFYLSR 49
V+K P TK ++ S S+ P YL R
Sbjct: 110 VIKETPLTKGVVISESTGVPVYLKR 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,152
Number of Sequences: 5004
Number of extensions: 36987
Number of successful extensions: 195
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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