Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_G18
         (202 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    24   3.2  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    23   4.2  
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc...    23   4.2  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    23   4.2  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    23   5.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    23   7.3  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    23   7.3  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    23   7.3  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    22   9.7  

>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 190 FARFR*TIISVTWDSALQVPLSIG 119
           FARF  T  +V W   + VPL+ G
Sbjct: 277 FARFATTPGAVHWPQIITVPLAFG 300


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 170 YYIRNLGLCSAGTFVNRL*TF 108
           Y+IR +GL S   FVN L  F
Sbjct: 163 YFIRIMGLSSLNKFVNLLHDF 183


>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
           kinase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 340

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 18  TQTSTMSKCVILLVIFIVHTVICSVKEPAPECL 116
           T+  T+  C +  V+  +HTV+ + K  A E L
Sbjct: 259 TKRPTVLACAVGQVLSCMHTVLVNTKTYADEIL 291


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 155 SYGYNSSTKTCELFYY 202
           S+GYN+S+   + FYY
Sbjct: 60  SFGYNASSSLIDDFYY 75


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 154 WDSALQVPLSIGCKHSGA 101
           WD     P+S+G  H+GA
Sbjct: 203 WDPRTDKPVSVGNGHAGA 220


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +3

Query: 18   TQTSTMSKCVILLVIFIVHTVICSVKEPAPECLQPID 128
            +Q++ M  C++  +     +++CSV +P+   L+  D
Sbjct: 932  SQSAWMLVCILQKLARSGLSILCSVSQPSSRILELFD 968


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 158 NLGLCSAGTFVNRL*TFWC 102
           NLG+ S G+F+  L   WC
Sbjct: 316 NLGIGSIGSFLYLLSNTWC 334


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 63  FIVHTVICSVKEPAPECLQPIDKGTCRAESQVTDIIVQRKRAN 191
           F ++T + + K  APE  +P+D  T     Q   +   ++R N
Sbjct: 123 FDLNTRVLAFKLDAPEAKKPVDLRTQHNRPQRPVVTPAKRRFN 165


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 20  PNVDHVEVCNFISYF 64
           PN DH EV N ++ F
Sbjct: 740 PNADHSEVINGVNLF 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 782,682
Number of Sequences: 5004
Number of extensions: 10880
Number of successful extensions: 33
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)