Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_G18
(202 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310... 28 0.90
01_06_0877 + 32662978-32663179,32663718-32663951,32664080-326641... 26 3.6
11_06_0553 - 24920428-24921057,24921149-24921276,24921372-249214... 26 4.8
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 25 6.4
01_06_1210 + 35430143-35430796,35430912-35431004,35431397-354315... 25 6.4
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 25 6.4
06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665... 25 8.4
03_05_0155 - 21307001-21307239,21308217-21308320,21308564-213087... 25 8.4
>03_06_0135 +
31928838-31929698,31929783-31929932,31930795-31931065,
31931157-31931249,31931442-31931616,31931715-31931960,
31932100-31932294,31932604-31932802
Length = 729
Score = 28.3 bits (60), Expect = 0.90
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 160 VTWDSALQVPLSIGCKHSGAGSLTLQITV*TMKI 59
+ W ++V L IGCK +G G L+ V T+ +
Sbjct: 342 IDWGKNIRVVLDIGCKSAGFGVALLEKDVITLSL 375
>01_06_0877 +
32662978-32663179,32663718-32663951,32664080-32664143,
32664250-32664379,32664483-32664624,32664806-32665063,
32665168-32665252,32665609-32665711,32666281-32666406,
32666476-32666589,32666769-32666887,32666993-32667080,
32667154-32667246,32667325-32667414,32667522-32667641,
32667782-32667877
Length = 687
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +3
Query: 54 LVIFIVHTVICSVKEPAPECLQPIDKGTCRAESQVTDIIVQRKRAN 191
L++ ++ T +CS P P+ + P +S + +VQ+ N
Sbjct: 180 LMLVLMSTQLCSGPSPEPKDVHPFIDAAMLQDSSIVSSVVQKLLLN 225
>11_06_0553 -
24920428-24921057,24921149-24921276,24921372-24921409,
24921522-24921734,24921906-24921998,24922089-24922276,
24922396-24922502,24922614-24922775,24922870-24922953,
24923060-24923168,24923340-24923468,24923504-24923556,
24923654-24923759,24924082-24924189
Length = 715
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 90 VKEPAPECLQPIDKGTCRAESQVTDIIVQRKRANCSI 200
+K+ + + +DK C AE ++ D+ Q KRA S+
Sbjct: 508 IKKLKQKRIAELDKEICDAEQELKDLNEQIKRAETSL 544
>02_05_0101 -
25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 25.4 bits (53), Expect = 6.4
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 196 EQFARFR*TIISVTWDSALQVPL-SIGCKHSGAGSLTLQITV*TMKITNKITHFDMVDV 23
EQ R ++ V ALQ + S G + SG G +TL + V MKI H D +D+
Sbjct: 504 EQLKELRFEVVEVDLLMALQEDIASFGEEESGGG-VTLLLRVPDMKI-----HLDFIDI 556
>01_06_1210 +
35430143-35430796,35430912-35431004,35431397-35431546,
35431817-35432076,35433378-35433641,35434475-35434682
Length = 542
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 199 IEQFARFR*TII-SVTWDSALQVPLSIGCKHSGAGSLTLQITV*TMKITNKITH 41
+ ++ RF I+ ++ W + + L +GC + G L V TM + K H
Sbjct: 290 VTKYIRFIQQIMPNIEWGTHTRTVLDVGCGVASFGGYLLDRNVITMSVAPKDEH 343
>01_06_0556 +
30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 24 TSTMSKCVILLVIFIVHTVICSVKEPAPECLQPIDKGTCRAESQV 158
T + +C+ +V TV+ S+ +PAPE + D +E Q+
Sbjct: 401 TFQIIRCIQQIVHMGEATVLVSLLQPAPEIFELFDDVMLLSEGQI 445
>06_03_0437 -
20765682-20765951,20766040-20766294,20766374-20766545,
20766964-20767097,20767205-20767288,20767369-20767659,
20767867-20768214,20768321-20768496,20768579-20768695,
20768780-20768936,20769110-20769225,20769323-20769483,
20769567-20769883,20769969-20770250,20770347-20770648,
20771977-20772067,20773203-20773256,20773723-20773812
Length = 1138
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 24 TSTMSKCVILLVIFIVHTVICSVKEPAPECLQPIDKGTCRAESQV 158
T + KC+ +V T++ S+ +PAPE + D +E Q+
Sbjct: 103 TFQIVKCLQQIVHLGEATILMSLLQPAPETFELFDDIILLSEGQI 147
>03_05_0155 -
21307001-21307239,21308217-21308320,21308564-21308772,
21308773-21308838,21308933-21308997,21309716-21309942,
21310156-21310269,21310515-21310522,21310964-21311053,
21311167-21311359,21312934-21313024,21313364-21313496,
21314756-21314896,21315017-21315078,21315159-21315246,
21315523-21315952,21316067-21316173
Length = 788
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 8 LVFYPNVDHVEVCNFISYFH 67
L F DH+EV N I YFH
Sbjct: 595 LSFLIGDDHLEVSNGIKYFH 614
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,851,434
Number of Sequences: 37544
Number of extensions: 67281
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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