Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_G17
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0843 - 21962223-21963815,21963957-21964607                       31   0.55 
04_04_0811 - 28246801-28247049,28247161-28247384,28248236-282484...    29   2.9  
03_06_0598 + 34977063-34977220,34977957-34978101,34978362-349784...    28   5.1  

>07_03_0843 - 21962223-21963815,21963957-21964607
          Length = 747

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 205 DRETRNKKNI-Y*RDYGAVDSAAGFRVYGRGFEPTYPTLQSD 83
           D+ET   K + Y  D    D   GFR++G+G+   Y T++ D
Sbjct: 433 DKETDWGKGVGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHD 474


>04_04_0811 -
           28246801-28247049,28247161-28247384,28248236-28248435,
           28248612-28248888,28249035-28249104
          Length = 339

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 166 DYGAVDSAAGFRVYGRG 116
           D+GAV S  G++VYGRG
Sbjct: 22  DHGAVRSVHGYKVYGRG 38


>03_06_0598 +
           34977063-34977220,34977957-34978101,34978362-34978481,
           34978640-34978774,34979138-34979213,34979398-34979450,
           34979594-34979695,34979848-34979964,34980170-34980228,
           34980810-34980984,34981628-34981762,34981855-34981953,
           34982143-34982251,34982981-34983093,34983206-34983265,
           34983821-34983835
          Length = 556

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 195 VSLSVKTLNLEIPCFKRCYRKTSKISCLTLDI 290
           + LS     + IPC KRCYR   K     +DI
Sbjct: 417 IKLSEDVTKVSIPCKKRCYRLFGKEGYPLVDI 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,340,033
Number of Sequences: 37544
Number of extensions: 224890
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)