Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_G12
         (261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.10 
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    25   1.7  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   2.2  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    24   2.9  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    24   3.8  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    24   3.8  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    23   5.1  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    23   8.8  

>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 29.1 bits (62), Expect = 0.10
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 50  KIITFLAYLEGPVLDTMLPK-GKGTILHSFVMATDKSLN 163
           K+ + L Y++  VLD  LPK G    LHSF++  D SLN
Sbjct: 47  KLDSELGYVK-QVLDETLPKKGYEKALHSFIIHEDPSLN 84


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 134 MNEELYPCLWGASYLAQVLLNTP 66
           +++E  P +WG ++L  +L+N P
Sbjct: 163 ISKETKPSVWGDNFLRIILINLP 185


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 114 RVQFFIHS*WRRTSPLTRVKMSQ 182
           R+Q + H   RRT+P+ R K +Q
Sbjct: 483 RIQHYSHPHPRRTNPILRTKSAQ 505


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 107 KGKGTILHSFVMATDKSLNARENVAAIRALEQATMRIAREK---RYQGVFA 250
           +GK   LH  + A +K L  +E  + +  L+Q   ++  E     +QG  A
Sbjct: 436 EGKKFALHERIQALEKQLGEKEAPSQVAGLKQQVEQLKLEPFKYHHQGALA 486


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 156 PLTRVKMSQPYERSNKRQCESRARNVTRECLQQT 257
           P  + K+ QP    N +   + A N+ ++  QQT
Sbjct: 285 PDQQQKLQQPISSENDQAASTTANNLLKQTQQQT 318


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 86  VLDTMLPKGKGTILHSFVMATDKSLNARENVAAIRAL 196
           V+D   P   G   HS  M TD+S    E +AA+  L
Sbjct: 159 VVDVCFP---GIFSHSIPMTTDESQAQPEYIAAVSGL 192


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 58  YNLS*SSSQFDFWFITRV 5
           YN S +S  F+FW +TRV
Sbjct: 161 YNFSFNSQPFEFW-VTRV 177


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 65  LAYLEGPVLDTMLPKGKGTILHSFVMA 145
           L  +EG V+ T + KG+  IL+ + +A
Sbjct: 456 LIEVEGEVMRTSIKKGEPKILYPYQLA 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,044,185
Number of Sequences: 5004
Number of extensions: 17830
Number of successful extensions: 45
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)