Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_G12
         (261 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127513-1|BAC87014.1|  123|Homo sapiens hondrocyte-derived) (FA...    29   2.0  

>AK127513-1|BAC87014.1|  123|Homo sapiens hondrocyte-derived)
           (FARP1).  protein.
          Length = 123

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 53  IITFLAYLEGPVLDTMLPKGKGTILHSFVMATDKSLNARE 172
           I  FL+YL  P+L+  LP GKG I+   +    KS++  +
Sbjct: 33  IYVFLSYLS-PMLECKLPSGKGPIVLYLLSPVTKSVSGAQ 71


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,333,820
Number of Sequences: 237096
Number of extensions: 652640
Number of successful extensions: 1221
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 76,859,062
effective HSP length: 64
effective length of database: 61,684,918
effective search space used: 1357068196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)