Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_G11
(227 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 26 0.77
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 24 3.1
SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa... 24 3.1
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 23 4.1
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 23 5.4
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 23 5.4
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 23 5.4
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans... 23 5.4
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 23 5.4
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 23 7.2
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 23 7.2
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 23 7.2
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 23 7.2
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 23 7.2
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 22 9.5
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha... 22 9.5
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.8 bits (54), Expect = 0.77
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 212 RDVHTVEFRKVANIGLSYNCHPIQAQRASNIPK 114
RD HT F G++Y H ++ + IPK
Sbjct: 886 RDDHTFSFDYKLKKGVNYQSHGLKVAEMAGIPK 918
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 23.8 bits (49), Expect = 3.1
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 156 LPPDTSPTCFQYSQAKVGIQPITTETAYR 70
LPP T T + A VGI P TETA R
Sbjct: 485 LPPITLVTAAWFMSAFVGILP--TETALR 511
>SPAC24H6.02c |||TIM23 translocase complex subunit
Tim15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 175
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 131 ASNIPKLKLAYNQLQPRP 78
AS +P +K +QLQP+P
Sbjct: 57 ASGVPSVKSDADQLQPKP 74
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1
Query: 13 YSNATKHFHFSAEDLVSCC 69
+SN FH + L+SCC
Sbjct: 1221 FSNLENSFHSLVQKLLSCC 1239
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 23.0 bits (47), Expect = 5.4
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +1
Query: 40 FSAEDLVSCCPICG 81
+SA+ + CP+CG
Sbjct: 163 YSADKAIESCPVCG 176
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = +1
Query: 46 AEDLVSCCPICGL-GCNWLYANFSLG 120
+ED CC +CG+ G L F G
Sbjct: 808 SEDRKKCCALCGIVGTEGLLVCFKCG 833
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 101 YNQLQPRPHIGQQLTRSSAE 42
YN LQ P Q L RSSAE
Sbjct: 370 YNCLQRHPTCMQMLHRSSAE 389
>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
transporter Hut1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 73 ICGLGCNWLYANFSLGILEARW 138
+CGL NW + + G+LE ++
Sbjct: 55 LCGLLWNWFHGVSARGLLEPKF 76
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +1
Query: 55 LVSCCPICGLGCNWLYANFSLGILEARWACIGW 153
L+S I L W F LG++ RW W
Sbjct: 2195 LLSVIKILSLNNVWFPVIFGLGLICPRWCLEFW 2227
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 141 SPTCFQYSQAKVGIQPITTETAYRATTN 58
+P+C + V QPI++ + Y +TT+
Sbjct: 154 NPSCVGIAVLAVLPQPISSSSTYNSTTS 181
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +2
Query: 140 LVSGGNYNSSQCLRPYEIPPCEH 208
++ G NY CLR + C+H
Sbjct: 3 IIDGKNYACVVCLRGHRGSSCQH 25
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 25 TKHFHFSAEDLVSCCPICGLGCNW 96
T H FS LVSC + CN+
Sbjct: 55 TYHRFFSILSLVSCLAYFTMACNY 78
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 119 PKLKLAYNQLQPRPHIGQQL 60
P L L YN +QP H ++L
Sbjct: 397 PYLSLIYNSIQPFTHWSRRL 416
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 58 VSCCPICGLGCNWLYANFSLGILEARWACIGWQ 156
+ CC + L W ++ FS+ ++ A + WQ
Sbjct: 206 IFCCVLWCLDDYWYFSLFSMFMIIALECSVVWQ 238
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 151 TRYKPNVLPIFPS*SWHT 98
TR N++P+F S +W T
Sbjct: 38 TRMSRNMMPLFSSVTWGT 55
>SPBC30B4.08 |eri1||double-strand siRNA
ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 150 PDTSPTCFQYSQAKVGIQPITTETA 76
P +PT Y ++ GIQ T + A
Sbjct: 128 PSMNPTLSDYCKSLTGIQQCTVDKA 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 911,717
Number of Sequences: 5004
Number of extensions: 14793
Number of successful extensions: 45
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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